Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G16610 - ( SR45 RNA binding / protein binding )
47 Proteins interacs with AT1G16610| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G55310
   | Experimentalpull downtwo hybridReconstituted Complexcoimmunoprecipitation | FSW = 0.2186
| Class A:nucleusClass B:plasma membraneClass D:plastid (p = 0.78)nucleus (p = 0.78)mitochondrion (p = 0.82) | SR33 RNA BINDING / PROTEIN BINDING |
| AT3G63400
| Experimentalpull down | FSW = 0.1048
| Class A:nucleusClass D:unclear (p = 0.09)nucleus (p = 0.78) | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
| AT3G50670
| Experimentalpull downpull downtwo hybridReconstituted Complexcoimmunoprecipitation | FSW = 0.0992
| Class A:nucleusClass D:plastid (p = 0.78)nucleus (p = 0.78)mitochondrion (p = 0.82) | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT2G43370
| Experimentalinteraction detection method | FSW = 0.1425
| Class A:nucleusClass D:nucleus (p = 0.78)mitochondrion (p = 0.82) | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE |
| AT4G24740
| Experimentalprotein kinase assaypull down | FSW = 0.0373
| Unknown | AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE |
| AT1G07350
| Experimentalinteraction detection method | FSW = 0.0186
| Unknown | TRANSFORMER SERINE/ARGININE-RICH RIBONUCLEOPROTEIN PUTATIVE |
| AT2G33730
| PredictedAffinity Capture-MS | FSW = 0.0421
| Class C:nucleus | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G20960
| PredictedAffinity Capture-MS | FSW = 0.0922
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G09760
| PredictedShared biological functionEnriched domain pairCo-expression | FSW = 0.0789
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT2G27100
| PredictedAffinity Capture-MS | FSW = 0.0189
| Class C:nucleus | SE (SERRATE) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G64270
| PredictedAffinity Capture-MS | FSW = 0.0618
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
| AT2G44680
| PredictedAffinity Capture-MS | FSW = 0.0026
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
| AT4G32420
| PredictedAffinity Capture-MS | FSW = 0.1333
| Class C:nucleus | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
| AT5G64200
| PredictedAffinity Capture-MS | FSW = 0.1273
| Class C:nucleus | ATSC35 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT2G47580
| PredictedAffinity Capture-MS | FSW = 0.0406
| Class C:nucleus | U1A (SPLICEOSOMAL PROTEIN U1A) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G02840
| PredictedAffinity Capture-MS | FSW = 0.2000
| Class C:nucleus | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT1G28060
| PredictedAffinity Capture-MS | FSW = 0.0848
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT2G37340
| PredictedAffinity Capture-MS | FSW = 0.1620
| Class C:nucleus | RSZ33 NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT1G80070
| PredictedAffinity Capture-MS | FSW = 0.1076
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
| AT4G26300
| PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | EMB1027 (EMBRYO DEFECTIVE 1027) ATP BINDING / AMINOACYL-TRNA LIGASE/ ARGININE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT4G28706
| PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
| AT1G06220
| PredictedAffinity Capture-MS | FSW = 0.1110
| Unknown | MEE5 (MATERNAL EFFECT EMBRYO ARREST 5) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
| AT5G23880
| PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
| AT1G03910
| PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK) |
| AT1G15200
| PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0559
| Unknown | PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN |
| AT1G15470
| PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G44910
| PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | PROTEIN BINDING |
| AT1G54380
| PredictedAffinity Capture-MS | FSW = 0.1760
| Unknown | SPLICEOSOME PROTEIN-RELATED |
| AT1G59760
| PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
| AT1G60200
| PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT1G60900
| PredictedAffinity Capture-MS | FSW = 0.1782
| Unknown | U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT PUTATIVE |
| AT1G61150
| PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LISH DIMERISATION MOTIF SUBGROUP (INTERPROIPR013720) CTLH C-TERMINAL TO LISH MOTIF (INTERPROIPR006595) LISH DIMERISATION MOTIF (INTERPROIPR006594) CT11-RANBPM (INTERPROIPR013144) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G111101) HAS 740 BLAST HITS TO 708 PROTEINS IN 137 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 401 FUNGI - 144 PLANTS - 139 VIRUSES - 0 OTHER EUKARYOTES - 56 (SOURCE NCBI BLINK) |
| AT1G67580
| PredictedAffinity Capture-MS | FSW = 0.0207
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT2G29210
| Predictedin vivoAffinity Capture-MS | FSW = 0.0336
| Unknown | SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN |
| AT3G11910
| PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
| AT3G17740
| PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | UNKNOWN PROTEIN |
| AT3G44850
| PredictedAffinity Capture-MS | FSW = 0.0786
| Unknown | PROTEIN KINASE-RELATED |
| AT3G55220
| PredictedAffinity Capture-MS | FSW = 0.0917
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G03430
| PredictedAffinity Capture-MS | FSW = 0.0508
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT4G24270
| Predictedin vivoin vitrotwo hybrid | FSW = 0.0413
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT4G25550
| PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | PROTEIN BINDING |
| AT5G13010
| PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G13480
| PredictedAffinity Capture-MS | FSW = 0.0116
| Unknown | FY PROTEIN BINDING |
| AT5G51280
| PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | DEAD-BOX PROTEIN ABSTRAKT PUTATIVE |
| AT5G51410
| PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | LUC7 N_TERMINUS DOMAIN-CONTAINING PROTEIN |
| AT5G55100
| PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT5G55670
| PredictedAffinity Capture-MS | FSW = 0.0392
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.724 seconds to be build.
This page takes 0.724 seconds to be build.