Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16890 - ( ubiquitin-conjugating enzyme putative )

36 Proteins interacs with AT1G16890
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G29170

Experimental

FSW = 0.0241

Unknown

WAVE2
AT1G78870

Experimental

pull down

FSW = 0.6979

Unknown

UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G23260

Experimental

two hybrid

FSW = 0.2058

Unknown

MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G70660

Experimental

two hybrid

FSW = 0.1655

Unknown

MMZ2 (MMS ZWEI HOMOLOGE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G36060

Experimental

two hybrid

FSW = 0.1237

Unknown

UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN
AT3G52560

Experimental

two hybrid

FSW = 0.0797

Unknown

UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
YGL087CExperimental

two hybrid

FSW = 0.1500

Unknown

UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
ETG7336Experimental

two hybrid

FSW = 0.0463

Unknown

UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G30110

Predicted

Affinity Capture-MS

FSW = 0.1012

Class C:

plasma membrane

ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT1G64230

Predicted

Shared biological function

Gene neighbors method

Phylogenetic profile method

FSW = 0.3228

Class C:

plasma membrane

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G36340

Predicted

Phylogenetic profile method

FSW = 0.4294

Unknown

UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT2G25880

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0321

Unknown

ATAUR2 (ATAURORA2) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE
AT3G20060

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.2586

Unknown

UBC19 (UBIQUITIN-CONJUGATING ENZYME19) UBIQUITIN-PROTEIN LIGASE
AT5G22750

Predicted

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Enriched domain pair

FSW = 0.0857

Unknown

RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT1G16190

Predicted

Phenotypic Enhancement

Enriched domain pair

FSW = 0.0208

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT3G13550

Predicted

Phylogenetic profile method

FSW = 0.3568

Unknown

FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G26970

Predicted

Affinity Capture-MS

FSW = 0.0474

Unknown

EXONUCLEASE FAMILY PROTEIN
AT5G44740

Predicted

Phenotypic Enhancement

FSW = 0.0730

Unknown

POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE
AT1G55915

Predicted

Phenotypic Enhancement

FSW = 0.1650

Unknown

ZINC ION BINDING
AT1G67500

Predicted

Phenotypic Enhancement

FSW = 0.0964

Unknown

ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT4G25120Predicted

Synthetic Rescue

FSW = 0.0518

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT1G14400

Predicted

two hybrid

FSW = 0.1901

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G45050

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.2025

Unknown

ATUBC2-1 UBIQUITIN-PROTEIN LIGASE
AT3G08690

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.4025

Unknown

UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT3G55380

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.2583

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT2G16740

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.1033

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT5G56150

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.3220

Unknown

UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT1G63800

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.1488

Unknown

UBC5 (UBIQUITIN-CONJUGATING ENZYME 5) UBIQUITIN-PROTEIN LIGASE
AT5G42990

Predicted

Phylogenetic profile method

FSW = 0.4830

Unknown

UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G53300

Predicted

Phylogenetic profile method

FSW = 0.3450

Unknown

UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT2G46030

Predicted

Phylogenetic profile method

FSW = 0.2576

Unknown

UBC6 (UBIQUITIN-CONJUGATING ENZYME 6) UBIQUITIN-PROTEIN LIGASE
AT5G41700

Predicted

Phylogenetic profile method

FSW = 0.1530

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G08700

Predicted

Phylogenetic profile method

FSW = 0.4111

Unknown

UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G25760

Predicted

Phylogenetic profile method

FSW = 0.4757

Unknown

PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G32790

Predicted

Phylogenetic profile method

FSW = 0.2475

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT4G27960

Predicted

Phylogenetic profile method

FSW = 0.2760

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454