Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16920 - ( ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP binding )

66 Proteins interacs with AT1G16920
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G17530

Predicted

Phylogenetic profile method

FSW = 0.6138

Class C:

vacuole

plasma membrane

ATRAB1C GTP BINDING
AT5G45750

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6665

Class C:

vacuole

plasma membrane

ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT1G02130

Predicted

Affinity Capture-Western

interologs mapping

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5409

Class C:

vacuole

plasma membrane

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT3G46060

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6268

Class C:

vacuole

plasma membrane

ATRAB8A GTP BINDING
AT4G17170

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6239

Class C:

vacuole

plasma membrane

RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE
AT2G44610

Predicted

Phylogenetic profile method

FSW = 0.2855

Class C:

vacuole

plasma membrane

RAB6A GTP BINDING / PROTEIN BINDING
AT5G47520

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6876

Class C:

vacuole

plasma membrane

ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING
AT5G46860

Predicted

interaction prediction

two hybrid

FSW = 0.0309

Class C:

vacuole

VAM3 SNAP RECEPTOR
AT1G55190

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.1870

Class C:

vacuole

PRA7
AT3G02520

Predicted

Dosage Growth Defect

FSW = 0.0288

Class C:

plasma membrane

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G38480

Predicted

Dosage Growth Defect

FSW = 0.0308

Class C:

plasma membrane

GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G59820

Predicted

Synthetic Lethality

FSW = 0.0636

Class C:

plasma membrane

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0063

Class C:

plasma membrane

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT5G52640

Predicted

two hybrid

synthetic growth defect

FSW = 0.0086

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G34580

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0927

Class C:

plasma membrane

COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G47700

Predicted

two hybrid

Co-expression

FSW = 0.0125

Class C:

plasma membrane

60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C)
AT3G07410

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6801

Class C:

plasma membrane

ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING
AT1G28550

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6876

Class C:

plasma membrane

ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING
AT5G59840

Predicted

Gene fusion method

Co-expression

FSW = 0.3453

Class C:

plasma membrane

RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT4G18430

Predicted

interologs mapping

synthetic growth defect

Synthetic Lethality

Phenotypic Enhancement

Phylogenetic profile method

Co-expression

FSW = 0.7935

Class C:

plasma membrane

ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT3G46830

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6672

Class C:

plasma membrane

ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING
AT1G06400

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7738

Class C:

plasma membrane

ARA-2 GTP BINDING
AT4G39990

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6581

Class C:

plasma membrane

RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING
AT5G59150

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6963

Class C:

plasma membrane

ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING
AT1G07410

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7144

Class C:

plasma membrane

ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G73640

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6838

Class C:

plasma membrane

ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING
AT4G18800

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3354

Class C:

plasma membrane

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G65270

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6600

Class C:

plasma membrane

ATRABA4A (ARABIDOPSIS RAB GTPASE HOMOLOG A4A) GTP BINDING
AT3G53610

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5992

Class C:

plasma membrane

ATRAB8 GTP BINDING
AT1G09630

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6708

Class C:

plasma membrane

ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING
AT5G47200

Predicted

Phylogenetic profile method

FSW = 0.5719

Class C:

plasma membrane

ATRAB1A GTP BINDING
AT2G43130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6646

Class C:

plasma membrane

ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G43890

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6214

Class C:

plasma membrane

ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING
AT3G11730

Predicted

Phylogenetic profile method

FSW = 0.4415

Class C:

plasma membrane

ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT2G06530

Predicted

interaction prediction

FSW = 0.0334

Unknown

VPS21
AT4G35860

Predicted

Phylogenetic profile method

FSW = 0.6838

Unknown

ATGB2 (GTP-BINDING 2) GTP BINDING
AT2G15240

Predicted

two hybrid

interaction prediction

FSW = 0.0631

Unknown

UNC-50 FAMILY PROTEIN
AT1G01200

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6915

Unknown

ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING
AT5G64990

Predicted

Phylogenetic profile method

FSW = 0.3884

Unknown

ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING
AT5G03520

Predicted

Gene fusion method

Co-expression

FSW = 0.5094

Unknown

ATRAB8C GTP BINDING
AT3G24350

Predicted

Co-purification

FSW = 0.0880

Unknown

SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT3G59500

Predicted

two hybrid

Reconstituted Complex

two hybrid

interaction prediction

FSW = 0.1470

Unknown

INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN
AT3G05710

Predicted

Co-purification

FSW = 0.0697

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT2G36300

Predicted

interaction prediction

two hybrid

Synthetic Lethality

Affinity Capture-Western

Synthetic Lethality

two hybrid

interologs mapping

FSW = 0.0866

Unknown

INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT2G37550

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.1072

Unknown

AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT2G39840

Predicted

two hybrid

FSW = 0.0090

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G05000

Predicted

interologs mapping

FSW = 0.1620

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT3G12740

Predicted

interologs mapping

FSW = 0.1152

Unknown

ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER
AT3G60860

Predicted

interologs mapping

FSW = 0.0174

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT5G09350

Predicted

Synthetic Lethality

FSW = 0.1724

Unknown

PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G09550

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1736

Unknown

RAB GDP-DISSOCIATION INHIBITOR
AT5G16040

Predicted

two hybrid

FSW = 0.0021

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G54750

Predicted

Affinity Capture-Western

interologs mapping

FSW = 0.0697

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT3G07890

Predicted

Synthetic Rescue

FSW = 0.1048

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT5G62700Predicted

two hybrid

FSW = 0.0068

Unknown

TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT2G33870

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7238

Unknown

ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING
AT3G12160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6733

Unknown

RABA4D (RAB GTPASE HOMOLOG A4D) GTP BINDING
AT5G47960

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7238

Unknown

ATRABA4C GTP BINDING
AT2G31680

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6597

Unknown

ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING
AT5G60860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7238

Unknown

ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING
AT3G15060

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7238

Unknown

ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING
AT5G10260

Predicted

Phylogenetic profile method

FSW = 0.1491

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT3G09910

Predicted

Phylogenetic profile method

FSW = 0.4767

Unknown

ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING
AT5G03530

Predicted

Phylogenetic profile method

FSW = 0.6344

Unknown

RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT5G55080

Predicted

Phylogenetic profile method

FSW = 0.4928

Unknown

ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING
AT4G17160

Predicted

Phylogenetic profile method

FSW = 0.7037

Unknown

ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454