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AT1G16920 - ( ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP binding )

66 Proteins interacs with AT1G16920

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT4G17530	Predicted Phylogenetic profile method	FSW = 0.6138	Class C: vacuole plasma membrane	ATRAB1C GTP BINDING
AT5G45750	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.6665	Class C: vacuole plasma membrane	ATRABA1C (ARABIDOPSIS RAB GTPASE HOMOLOG A1C) GTP BINDING
AT1G02130	Predicted Affinity Capture-Western interologs mapping Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.5409	Class C: vacuole plasma membrane	ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT3G46060	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.6268	Class C: vacuole plasma membrane	ATRAB8A GTP BINDING
AT4G17170	Predicted Phylogenetic profile method Co-expression	FSW = 0.6239	Class C: vacuole plasma membrane	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) GTP BINDING / GTPASE
AT2G44610	Predicted Phylogenetic profile method	FSW = 0.2855	Class C: vacuole plasma membrane	RAB6A GTP BINDING / PROTEIN BINDING
AT5G47520	Predicted Phylogenetic profile method Co-expression	FSW = 0.6876	Class C: vacuole plasma membrane	ATRABA5A (ARABIDOPSIS RAB GTPASE HOMOLOG A5A) GTP BINDING
AT5G46860	Predicted interaction prediction two hybrid	FSW = 0.0309	Class C: vacuole	VAM3 SNAP RECEPTOR
AT1G55190	Predicted Affinity Capture-Western two hybrid	FSW = 0.1870	Class C: vacuole	PRA7
AT3G02520	Predicted Dosage Growth Defect	FSW = 0.0288	Class C: plasma membrane	GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G38480	Predicted Dosage Growth Defect	FSW = 0.0308	Class C: plasma membrane	GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G59820	Predicted Synthetic Lethality	FSW = 0.0636	Class C: plasma membrane	ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT1G11680	Predicted Synthetic Lethality	FSW = 0.0063	Class C: plasma membrane	CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT5G52640	Predicted two hybrid synthetic growth defect	FSW = 0.0086	Class C: plasma membrane	ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G34580	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.0927	Class C: plasma membrane	COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G47700	Predicted two hybrid Co-expression	FSW = 0.0125	Class C: plasma membrane	60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C)
AT3G07410	Predicted Phylogenetic profile method Co-expression	FSW = 0.6801	Class C: plasma membrane	ATRABA5B (ARABIDOPSIS RAB GTPASE HOMOLOG A5B) GTP BINDING
AT1G28550	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.6876	Class C: plasma membrane	ATRABA1I (ARABIDOPSIS RAB GTPASE HOMOLOG A1I) GTP BINDING
AT5G59840	Predicted Gene fusion method Co-expression	FSW = 0.3453	Class C: plasma membrane	RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT4G18430	Predicted interologs mapping synthetic growth defect Synthetic Lethality Phenotypic Enhancement Phylogenetic profile method Co-expression	FSW = 0.7935	Class C: plasma membrane	ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING
AT3G46830	Predicted Phylogenetic profile method Co-expression	FSW = 0.6672	Class C: plasma membrane	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C) GTP BINDING
AT1G06400	Predicted Gene fusion method Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.7738	Class C: plasma membrane	ARA-2 GTP BINDING
AT4G39990	Predicted Phylogenetic profile method Co-expression	FSW = 0.6581	Class C: plasma membrane	RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING
AT5G59150	Predicted Phylogenetic profile method Co-expression	FSW = 0.6963	Class C: plasma membrane	ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D) GTP BINDING
AT1G07410	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.7144	Class C: plasma membrane	ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B) GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G73640	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.6838	Class C: plasma membrane	ATRABA6A (ARABIDOPSIS RAB GTPASE HOMOLOG A6A) GTP BINDING
AT4G18800	Predicted Phylogenetic profile method Co-expression	FSW = 0.3354	Class C: plasma membrane	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT5G65270	Predicted Phylogenetic profile method Co-expression	FSW = 0.6600	Class C: plasma membrane	ATRABA4A (ARABIDOPSIS RAB GTPASE HOMOLOG A4A) GTP BINDING
AT3G53610	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.5992	Class C: plasma membrane	ATRAB8 GTP BINDING
AT1G09630	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.6708	Class C: plasma membrane	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING
AT5G47200	Predicted Phylogenetic profile method	FSW = 0.5719	Class C: plasma membrane	ATRAB1A GTP BINDING
AT2G43130	Predicted Phylogenetic profile method Co-expression	FSW = 0.6646	Class C: plasma membrane	ARA4 GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G43890	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.6214	Class C: plasma membrane	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING
AT3G11730	Predicted Phylogenetic profile method	FSW = 0.4415	Class C: plasma membrane	ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT2G06530	Predicted interaction prediction	FSW = 0.0334	Unknown	VPS21
AT4G35860	Predicted Phylogenetic profile method	FSW = 0.6838	Unknown	ATGB2 (GTP-BINDING 2) GTP BINDING
AT2G15240	Predicted two hybrid interaction prediction	FSW = 0.0631	Unknown	UNC-50 FAMILY PROTEIN
AT1G01200	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.6915	Unknown	ATRABA3 (ARABIDOPSIS RAB GTPASE HOMOLOG A3) GTP BINDING
AT5G64990	Predicted Phylogenetic profile method	FSW = 0.3884	Unknown	ATRABH1A (ARABIDOPSIS RAB GTPASE HOMOLOG H1A) GTP BINDING
AT5G03520	Predicted Gene fusion method Co-expression	FSW = 0.5094	Unknown	ATRAB8C GTP BINDING
AT3G24350	Predicted Co-purification	FSW = 0.0880	Unknown	SYP32 (SYNTAXIN OF PLANTS 32) SNAP RECEPTOR
AT3G59500	Predicted two hybrid Reconstituted Complex two hybrid interaction prediction	FSW = 0.1470	Unknown	INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN
AT3G05710	Predicted Co-purification	FSW = 0.0697	Unknown	SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT2G36300	Predicted interaction prediction two hybrid Synthetic Lethality Affinity Capture-Western Synthetic Lethality two hybrid interologs mapping	FSW = 0.0866	Unknown	INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN
AT2G37550	Predicted interologs mapping Synthetic Lethality	FSW = 0.1072	Unknown	AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT2G39840	Predicted two hybrid	FSW = 0.0090	Unknown	TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G05000	Predicted interologs mapping	FSW = 0.1620	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT3G12740	Predicted interologs mapping	FSW = 0.1152	Unknown	ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER
AT3G60860	Predicted interologs mapping	FSW = 0.0174	Unknown	GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT5G09350	Predicted Synthetic Lethality	FSW = 0.1724	Unknown	PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G09550	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid interaction prediction Enriched domain pair Co-expression	FSW = 0.1736	Unknown	RAB GDP-DISSOCIATION INHIBITOR
AT5G16040	Predicted two hybrid	FSW = 0.0021	Unknown	REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT5G54750	Predicted Affinity Capture-Western interologs mapping	FSW = 0.0697	Unknown	TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT3G07890	Predicted Synthetic Rescue	FSW = 0.1048	Unknown	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT5G62700	Predicted two hybrid	FSW = 0.0068	Unknown	TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT2G33870	Predicted Phylogenetic profile method Co-expression	FSW = 0.7238	Unknown	ARRABA1H (ARABIDOPSIS RAB GTPASE HOMOLOG A1H) GTP BINDING
AT3G12160	Predicted Phylogenetic profile method Co-expression	FSW = 0.6733	Unknown	RABA4D (RAB GTPASE HOMOLOG A4D) GTP BINDING
AT5G47960	Predicted Phylogenetic profile method Co-expression	FSW = 0.7238	Unknown	ATRABA4C GTP BINDING
AT2G31680	Predicted Phylogenetic profile method Co-expression	FSW = 0.6597	Unknown	ATRABA5D (ARABIDOPSIS RAB GTPASE HOMOLOG A5D) GTP BINDING
AT5G60860	Predicted Phylogenetic profile method Co-expression	FSW = 0.7238	Unknown	ATRABA1F (ARABIDOPSIS RAB GTPASE HOMOLOG A1F) GTP BINDING
AT3G15060	Predicted Phylogenetic profile method Co-expression	FSW = 0.7238	Unknown	ATRABA1G (ARABIDOPSIS RAB GTPASE HOMOLOG A1G) GTP BINDING
AT5G10260	Predicted Phylogenetic profile method	FSW = 0.1491	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT3G09910	Predicted Phylogenetic profile method	FSW = 0.4767	Unknown	ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING
AT5G03530	Predicted Phylogenetic profile method	FSW = 0.6344	Unknown	RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING
AT5G55080	Predicted Phylogenetic profile method	FSW = 0.4928	Unknown	ATRAN4 (RAS-RELATED NUCLEAR PROTEIN 4) GTP BINDING / GTPASE/ PROTEIN BINDING
AT4G17160	Predicted Phylogenetic profile method	FSW = 0.7037	Unknown	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) GTP BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT1G16920 - ( ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP binding )

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Fasta sequences:

Quick help

FSW

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PEP

How to cite