Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16970 - ( KU70 (ARABIDOPSIS THALIANA KU70 HOMOLOG) double-stranded DNA binding / protein binding )
65 Proteins interacs with AT1G16970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G48050 | Experimentaltwo hybrid | FSW = 0.2593
| Class A:nucleuscytosolClass B:peroxisomeClass D:nucleus (p = 0.78) | KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING |
AT2G45660 | Experimental | FSW = 0.0076
| Class D:nucleus (p = 0.78) | AGL20 (AGAMOUS-LIKE 20) TRANSCRIPTION FACTOR |
AT3G57040 | Experimentaltwo hybrid | FSW = 0.0157
| Class D:nucleus (p = 0.78) | ARR9 (RESPONSE REGULATOR 9) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G49950 | Experimental | FSW = 0.0142
| Unknown | DNA-BINDING PROTEIN PUTATIVE |
AT4G13870 | Experimentalcoimmunoprecipitationpull down | FSW = 0.0296
| Unknown | WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
AT5G17550 | PredictedAffinity Capture-MS | FSW = 0.0081
| Class C:peroxisome | PEX19-2 |
AT3G03490 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0067
| Class C:peroxisome | PEX19-1 (PEROXIN 19-1) |
AT2G30620 | PredictedSynthetic Rescue | FSW = 0.0152
| Class C:nucleus | HISTONE H12 |
AT5G59690 | PredictedAffinity Capture-MS | FSW = 0.0625
| Class C:nucleus | HISTONE H4 |
AT5G22330 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0286
| Class C:nucleus | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT3G54610 | PredictedReconstituted Complextwo hybridco-fractionationCo-fractionationAffinity Capture-Western | FSW = 0.0831
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G16820 | Predictedin vitroAffinity Capture-MS | FSW = 0.0199
| Class C:nucleus | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G51060 | PredictedPhenotypic Enhancement | FSW = 0.0782
| Class C:nucleus | HTA10 DNA BINDING |
AT1G67970 | Predictedin vitroAffinity Capture-MS | FSW = 0.0398
| Class C:nucleus | AT-HSFA8 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G29570 | Predictedin vitroin vivoin vivoin vitroAffinity Capture-MS | FSW = 0.1277
| Class C:nucleus | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT5G17690 | Predictedin vivoin vitrotwo hybridAffinity Capture-MS | FSW = 0.0213
| Class C:nucleus | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0272
| Class C:nucleus | HISTONE H2B PUTATIVE |
AT5G60410 | PredictedbiochemicalPhenotypic Suppression | FSW = 0.0381
| Class C:nucleus | SIZ1 DNA BINDING / SUMO LIGASE |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0111
| Class C:nucleus | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT5G64630 | PredictedPhenotypic Enhancement | FSW = 0.1289
| Class C:nucleus | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0211
| Class C:cytosol | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G39280 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0304
| Class C:cytosol | PHENYLALANYL-TRNA SYNTHETASE PUTATIVE / PHENYLALANINE--TRNA LIGASE PUTATIVE |
AT1G07660 | PredictedAffinity Capture-MS | FSW = 0.0275
| Unknown | HISTONE H4 |
AT1G11320 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | UNKNOWN PROTEIN |
AT5G15680 | Predictedtwo hybridtwo hybrid | FSW = 0.0153
| Unknown | BINDING |
AT5G41150 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1624
| Unknown | UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE |
AT2G31970 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1236
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT2G41460 | Predictedin vitroAffinity Capture-MS | FSW = 0.0237
| Unknown | ARP DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE |
AT5G66130 | PredictedSynthetic RescuePhenotypic Suppression | FSW = 0.1456
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G58290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0250
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G54260 | PredictedSynthetic RescuePhenotypic SuppressionPhenotypic SuppressionSynthetic Rescuein vivotwo hybridAffinity Capture-MS | FSW = 0.1399
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G05210 | PredictedPhenotypic Enhancement | FSW = 0.0655
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT1G06760 | PredictedSynthetic Rescue | FSW = 0.0392
| Unknown | HISTONE H1 PUTATIVE |
AT3G25980 | PredictedSynthetic RescueCo-expression | FSW = 0.0342
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G40820 | PredictedSynthetic RescueSynthetic RescuePhenotypic Suppression | FSW = 0.1055
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G20850 | PredictedSynthetic RescueSynthetic Lethality | FSW = 0.0857
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G10930 | PredictedSynthetic LethalityPhenotypic SuppressionPhenotypic Enhancementinterologs mappingPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0903
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G05740 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0790
| Unknown | RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G03420 | Predictedin vivo | FSW = 0.0312
| Unknown | KU70-BINDING FAMILY PROTEIN |
AT3G12980 | Predictedtwo hybridReconstituted Complex | FSW = 0.0335
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G23590 | Predictedin vivoin vitro | FSW = 0.1062
| Unknown | RFR1 (REF4-RELATED 1) |
AT3G54180 | Predictedbiochemical | FSW = 0.0514
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT4G11330 | Predictedin vitroin vivo | FSW = 0.0198
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G11300 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0306
| Unknown | CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G16850 | PredictedSynthetic Lethalityinterologs mappinginterologs mappingin vivoin vitroPhenotypic Enhancement | FSW = 0.1394
| Unknown | ATTERT (TELOMERASE REVERSE TRANSCRIPTASE) TELOMERASE/ TELOMERIC TEMPLATE RNA REVERSE TRANSCRIPTASE |
AT5G27680 | Predictedin vivoin vitro | FSW = 0.0749
| Unknown | RECQSIM (ARABIDOPSIS RECQ HELICASE SIM) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G43080 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.0261
| Unknown | CYCA31 (CYCLIN A31) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0566
| Unknown | H2AXA DNA BINDING |
AT1G10520 | PredictedSynthetic Rescue | FSW = 0.0435
| Unknown | DNA POLYMERASE LAMBDA (POLL) |
AT1G54390 | PredictedSynthetic LethalityPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0487
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G67500 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.1508
| Unknown | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G06910 | PredictedSynthetic Lethality | FSW = 0.0645
| Unknown | ULP1A (UB-LIKE PROTEASE 1A) SUMO-SPECIFIC PROTEASE/ CYSTEINE-TYPE PEPTIDASE |
AT5G10400 | PredictedAffinity Capture-MS | FSW = 0.0572
| Unknown | HISTONE H3 |
AT5G27740 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.0509
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G48640 | PredictedPhenotypic Enhancement | FSW = 0.0313
| Unknown | CYCLIN FAMILY PROTEIN |
AT1G18090 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.1337
| Unknown | EXONUCLEASE PUTATIVE |
AT1G49980 | PredictedPhenotypic Enhancement | FSW = 0.0767
| Unknown | DNA-DIRECTED DNA POLYMERASE/ DAMAGED DNA BINDING |
AT2G45000 | PredictedAffinity Capture-MS | FSW = 0.0241
| Unknown | EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE |
AT3G22590 | PredictedPhenotypic Enhancement | FSW = 0.0329
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.0339
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G25120 | PredictedPhenotypic Enhancement | FSW = 0.0455
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.0576
| Unknown | BINDING |
AT3G05480 | PredictedPhenotypic Suppression | FSW = 0.1074
| Unknown | RAD9 |
AT1G09200 | PredictedAffinity Capture-MS | FSW = 0.0440
| Unknown | HISTONE H3 |
AT1G29630 | PredictedSynthetic Rescue | FSW = 0.0745
| Unknown | NUCLEASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454