Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G16980 - ( ATTPS2 alphaalpha-trehalose-phosphate synthase (UDP-forming)/ transferase transferring glycosyl groups )
32 Proteins interacs with AT1G16980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G23190 | Predictedinterologs mapping | FSW = 0.0244
| Unknown | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT4G19640 | PredictedAffinity Capture-MS | FSW = 0.0054
| Unknown | ARA7 GTP BINDING |
AT1G54270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0049
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT1G50460 | PredictedPhenotypic SuppressionSynthetic Rescue | FSW = 0.0556
| Unknown | HKL1 (HEXOKINASE-LIKE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G48470 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0282
| Unknown | GLN15 (GLUTAMINE SYNTHETASE 15) GLUTAMATE-AMMONIA LIGASE |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0041
| Unknown | RNA BINDING |
AT1G06390 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT1G60140 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4286
| Unknown | ATTPS10 (TREHALOSE PHOSPHATE SYNTHASE) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT2G41620 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN |
AT1G44900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0204
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G18700 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3086
| Unknown | ATTPS11 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G42830 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT5G47430 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | ZINC ION BINDING |
AT4G24040 | Predictedco-fractionationCo-fractionationAffinity Capture-Western | FSW = 0.0196
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT1G23870 | PredictedAffinity Capture-WesternPhylogenetic profile methodCo-expression | FSW = 0.4651
| Unknown | ATTPS9 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G79150 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | BINDING |
AT1G47840 | PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | HXK3 (HEXOKINASE 3) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT4G05440 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | EDA35 (EMBRYO SAC DEVELOPMENT ARREST 35) |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.0162
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT3G53570 | PredictedAffinity Capture-MS | FSW = 0.0218
| Unknown | AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G19420 | PredictedAffinity Capture-MS | FSW = 0.0238
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT1G54290 | PredictedAffinity Capture-MS | FSW = 0.0053
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT3G08670 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | UNKNOWN PROTEIN |
AT1G08990 | PredictedPhenotypic Enhancement | FSW = 0.1143
| Unknown | PGSIP5 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 5) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G74310 | PredictedPhenotypic Enhancement | FSW = 0.0120
| Unknown | ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G09020 | PredictedSynthetic Rescue | FSW = 0.0152
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G70290 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1042
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G06410 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3277
| Unknown | ATTPS7 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G17770 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0857
| Unknown | ATTPS5 PROTEIN BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G68020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1118
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G27550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4060
| Unknown | ATTPS4 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454