Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17070 - ( D111/G-patch domain-containing protein )
38 Proteins interacs with AT1G17070Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MS | FSW = 0.0043
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT1G20960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3792
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09760 | PredictedAffinity Capture-MS | FSW = 0.3734
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G09770 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.3555
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.3208
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G54670 | Predictedtwo hybrid | FSW = 0.0039
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT2G33340 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2370
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G18790 | PredictedAffinity Capture-Western | FSW = 0.2407
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT2G47250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1570
| Unknown | RNA HELICASE PUTATIVE |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | RNA BINDING |
AT3G55360 | Predictedtwo hybrid | FSW = 0.0077
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT3G01310 | Predictedtwo hybrid | FSW = 0.0177
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G19990 | Predictedtwo hybrid | FSW = 0.0035
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT5G08290 | PredictedAffinity Capture-MS | FSW = 0.3333
| Unknown | YLS8 CATALYTIC |
AT4G30220 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3477
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT2G23930 | PredictedAffinity Capture-MS | FSW = 0.3890
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT1G20580 | PredictedAffinity Capture-MS | FSW = 0.3818
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G28060 | Predictedtwo hybrid | FSW = 0.2055
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT3G62310 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationtwo hybridbiochemicalReconstituted ComplexSynthetic Lethalitysynthetic growth defect | FSW = 0.1412
| Unknown | RNA HELICASE PUTATIVE |
AT1G04510 | PredictedAffinity Capture-MS | FSW = 0.2713
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G15900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2119
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G10580 | PredictedAffinity Capture-MS | FSW = 0.1947
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G17130 | PredictedAffinity Capture-MS | FSW = 0.2955
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G60170 | PredictedAffinity Capture-MS | FSW = 0.2778
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT2G20000 | Predictedtwo hybrid | FSW = 0.0165
| Unknown | HBT (HOBBIT) BINDING |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.1565
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G04885 | Predictedtwo hybrid | FSW = 0.0413
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT5G06140 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
AT5G06160 | PredictedAffinity Capture-MS | FSW = 0.3013
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G28740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4788
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT5G41770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2540
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G55220 | PredictedAffinity Capture-MS | FSW = 0.3202
| Unknown | SPLICING FACTOR PUTATIVE |
AT3G13210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1896
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G16650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2976
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT4G26710 | Predictedtwo hybrid | FSW = 0.0216
| Unknown | ATP SYNTHASE SUBUNIT H FAMILY PROTEIN |
AT1G72990 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | BGAL17 (BETA-GALACTOSIDASE 17) BETA-GALACTOSIDASE/ CATALYTIC/ CATION BINDING |
AT1G66500 | Predictedtwo hybrid | FSW = 0.0357
| Unknown | ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454