Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G17130 - ( cell cycle control protein-related )
46 Proteins interacs with AT1G17130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G30860 | Predictedinteraction predictiontwo hybrid | FSW = 0.0288
| Unknown | ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE PEROXIDASE/ GLUTATHIONE TRANSFERASE |
AT1G54270 | Predictedinteraction prediction | FSW = 0.0132
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0094
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0030
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G11010 | PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE |
AT1G09760 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1482
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G09770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2007
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G28190 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0049
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT2G33340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-Westerninteraction prediction | FSW = 0.1186
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G18790 | PredictedAffinity Capture-Western | FSW = 0.2337
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT2G47250 | PredictedAffinity Capture-MS | FSW = 0.0741
| Unknown | RNA HELICASE PUTATIVE |
AT1G17880 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE |
AT1G73230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0193
| Unknown | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
AT4G26110 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0046
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT1G24510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0520
| Unknown | T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE |
AT1G20580 | PredictedAffinity Capture-MS | FSW = 0.1245
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G62310 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0732
| Unknown | RNA HELICASE PUTATIVE |
AT1G04510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1179
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G23900 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0121
| Unknown | NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4) |
AT4G33710 | PredictedReconstituted Complex | FSW = 0.0172
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G23860 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | PHD FINGER PROTEIN-RELATED |
AT1G52300 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexAffinity Capture-MSsynthetic growth defect | FSW = 0.0860
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G39200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0471
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G77990 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1114
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT4G15900 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1311
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G20050 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0213
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G08830 | PredictedAffinity Capture-MS | FSW = 0.0084
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT1G04170 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0058
| Unknown | EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT1G10580 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1683
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G17070 | PredictedAffinity Capture-MS | FSW = 0.2955
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0109
| Unknown | COX19 FAMILY PROTEIN |
AT2G20290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complex | FSW = 0.0636
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G31900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0695
| Unknown | XIF MOTOR |
AT2G46710 | PredictedReconstituted ComplexReconstituted Complex | FSW = 0.0084
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT3G62760 | PredictedReconstituted Complex | FSW = 0.0513
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G04700 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complexinterologs mapping | FSW = 0.0894
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G13860 | PredictedReconstituted ComplexReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSProtein-peptide | FSW = 0.0548
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT1G80930 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2608
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G03820 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0073
| Unknown | NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN |
AT5G28740 | Predictedtwo hybridAffinity Capture-MStwo hybridAffinity Capture-Westerninteraction prediction | FSW = 0.3613
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT5G41770 | PredictedAffinity Capture-MSAffinity Capture-Westerntwo hybridinteraction prediction | FSW = 0.1382
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G16650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2086
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT3G13210 | PredictedAffinity Capture-MS | FSW = 0.1648
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G30090 | Predictedtwo hybrid | FSW = 0.0216
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454