Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17130 - ( cell cycle control protein-related )

46 Proteins interacs with AT1G17130
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G30860

Predicted

interaction prediction

two hybrid

FSW = 0.0288

Unknown

ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE PEROXIDASE/ GLUTATHIONE TRANSFERASE
AT1G54270

Predicted

interaction prediction

FSW = 0.0132

Unknown

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0094

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0030

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G11010

Predicted

Affinity Capture-MS

FSW = 0.0192

Unknown

NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE
AT1G09760

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1482

Unknown

U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G09770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2007

Unknown

ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT2G28190

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0049

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT2G33340

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

interaction prediction

FSW = 0.1186

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G18790

Predicted

Affinity Capture-Western

FSW = 0.2337

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK)
AT2G47250

Predicted

Affinity Capture-MS

FSW = 0.0741

Unknown

RNA HELICASE PUTATIVE
AT1G17880

Predicted

Affinity Capture-MS

FSW = 0.0257

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE
AT1G73230

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0193

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN
AT4G26110

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0046

Unknown

NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT2G19480

Predicted

Affinity Capture-MS

FSW = 0.0073

Unknown

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT1G24510

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0520

Unknown

T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE
AT1G20580

Predicted

Affinity Capture-MS

FSW = 0.1245

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0224

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT3G62310

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0732

Unknown

RNA HELICASE PUTATIVE
AT1G04510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1179

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G23900

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0121

Unknown

NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4)
AT4G33710

Predicted

Reconstituted Complex

FSW = 0.0172

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G23860

Predicted

two hybrid

FSW = 0.0220

Unknown

PHD FINGER PROTEIN-RELATED
AT1G52300

Predicted

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

synthetic growth defect

FSW = 0.0860

Unknown

60S RIBOSOMAL PROTEIN L37 (RPL37B)
AT4G39200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0471

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT1G77990

Predicted

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1114

Unknown

AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT4G15900

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1311

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G20050

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0213

Unknown

ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G08830

Predicted

Affinity Capture-MS

FSW = 0.0084

Unknown

CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE
AT1G04170

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0058

Unknown

EIF2 GAMMA TRANSLATION FACTOR NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR
AT1G10580

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1683

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G17070

Predicted

Affinity Capture-MS

FSW = 0.2955

Unknown

D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G66590

Predicted

two hybrid

FSW = 0.0109

Unknown

COX19 FAMILY PROTEIN
AT2G20290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0636

Unknown

XIG MOTOR/ PROTEIN BINDING
AT2G31900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0695

Unknown

XIF MOTOR
AT2G46710

Predicted

Reconstituted Complex

Reconstituted Complex

FSW = 0.0084

Unknown

RAC GTPASE ACTIVATING PROTEIN PUTATIVE
AT3G62760

Predicted

Reconstituted Complex

FSW = 0.0513

Unknown

ATGSTF13 GLUTATHIONE TRANSFERASE
AT4G04700

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

interologs mapping

FSW = 0.0894

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G13860

Predicted

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Protein-peptide

FSW = 0.0548

Unknown

ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT1G80930

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.2608

Unknown

MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT2G03820

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0073

Unknown

NONSENSE-MEDIATED MRNA DECAY NMD3 FAMILY PROTEIN
AT5G28740

Predicted

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-Western

interaction prediction

FSW = 0.3613

Unknown

TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT5G41770

Predicted

Affinity Capture-MS

Affinity Capture-Western

two hybrid

interaction prediction

FSW = 0.1382

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G16650

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2086

Unknown

PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2)
AT3G13210

Predicted

Affinity Capture-MS

FSW = 0.1648

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT1G30090

Predicted

two hybrid

FSW = 0.0216

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454