Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17370 - ( UBP1B (oligouridylate binding protein 1B) mRNA 3-UTR binding )
23 Proteins interacs with AT1G17370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G10350 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0195
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT5G22060 | PredictedGene fusion method | FSW = 0.0602
| Unknown | ATJ2 PROTEIN BINDING |
AT4G35600 | PredictedGene fusion method | FSW = 0.0833
| Unknown | CONNEXIN 32 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G47010 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT5G19990 | PredictedGene fusion method | FSW = 0.0410
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT3G06010 | PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G54910 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0098
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G20580 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G68130 | PredictedGene fusion method | FSW = 0.2857
| Unknown | ATIDD14 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 14) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G30620 | PredictedGene fusion method | FSW = 0.1111
| Unknown | MUR4 (MURUS 4) UDP-ARABINOSE 4-EPIMERASE/ CATALYTIC |
AT2G36200 | Predictedsynthetic growth defect | FSW = 0.0322
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G79880 | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | LA DOMAIN-CONTAINING PROTEIN |
AT5G40490 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0605
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G26695 | PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | BINDING / ZINC ION BINDING |
AT1G08260 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT3G60240 | PredictedAffinity Capture-MS | FSW = 0.0313
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT1G10930 | PredictedSynthetic Lethality | FSW = 0.0120
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G04950 | Predictedtwo hybrid | FSW = 0.0090
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT3G59510 | PredictedEnriched domain pairGene fusion method | FSW = 0.5348
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G38970 | PredictedGene fusion method | FSW = 0.1111
| Unknown | BR6OX1 (BRASSINOSTEROID-6-OXIDASE 1) MONOOXYGENASE/ OXYGEN BINDING |
AT5G49200 | PredictedGene fusion method | FSW = 0.4516
| Unknown | WD-40 REPEAT FAMILY PROTEIN / ZFWD4 PROTEIN (ZFWD4) |
AT5G20000 | PredictedGene fusion method | FSW = 0.0784
| Unknown | 26S PROTEASOME AAA-ATPASE SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454