Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17590 - ( NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) transcription factor )
20 Proteins interacs with AT1G17590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33040 | PredictedAffinity Capture-MS | FSW = 0.0224
| Class C:nucleus | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
AT1G08970 | PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybrid | FSW = 0.1829
| Class C:nucleus | NF-YC9 (NUCLEAR FACTOR Y SUBUNIT C9) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G31660 | PredictedAffinity Capture-MS | FSW = 0.0193
| Class C:nucleus | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
AT3G55620 | PredictedAffinity Capture-MS | FSW = 0.0350
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT2G13570 | PredictedAffinity Capture-MSReconstituted Complextwo hybrid | FSW = 0.1498
| Class C:nucleus | NF-YB7 (NUCLEAR FACTOR Y SUBUNIT B7) TRANSCRIPTION FACTOR |
AT5G15550 | PredictedAffinity Capture-MS | FSW = 0.0328
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G23810 | PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2) ADENOSYLHOMOCYSTEINASE/ BINDING / CATALYTIC |
AT5G09650 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT2G43750 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE |
AT1G06380 | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | RIBOSOMAL PROTEIN-RELATED |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0326
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT1G15870 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G23820 | PredictedAffinity Capture-MS | FSW = 0.0464
| Unknown | SPDS1 (SPERMIDINE SYNTHASE 1) SPERMIDINE SYNTHASE |
AT1G29550 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT3G07270 | PredictedAffinity Capture-MS | FSW = 0.0386
| Unknown | GTP CYCLOHYDROLASE I |
AT5G06360 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
AT1G29990 | PredictedSynthetic Lethality | FSW = 0.0160
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT2G44150 | PredictedSynthetic Lethality | FSW = 0.0130
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454