Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17745 - ( PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) phosphoglycerate dehydrogenase )
49 Proteins interacs with AT1G17745Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20010 | Predictedtwo hybrid | FSW = 0.0111
| Class C:plastid | TUB5 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G09760 | Predictedinteraction predictiontwo hybrid | FSW = 0.0047
| Class C:plastid | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT4G34200 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSPhenotypic EnhancementEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1299
| Class C:plastid | EDA9 (EMBRYO SAC DEVELOPMENT ARREST 9) ATP BINDING |
AT3G19480 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0970
| Class C:plastid | D-3-PHOSPHOGLYCERATE DEHYDROGENASE PUTATIVE / 3-PGDH PUTATIVE |
AT5G14780 | Predictedinteraction predictiontwo hybridEnriched domain pairCo-expression | FSW = 0.0440
| Class C:plastid | FDH (FORMATE DEHYDROGENASE) NAD OR NADH BINDING / BINDING / CATALYTIC/ COFACTOR BINDING / OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G22360 | Predictedinteraction prediction | FSW = 0.0067
| Class C:plastid | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT5G20980 | Predictedpull down | FSW = 0.0186
| Class C:plastid | ATMS3 (METHIONINE SYNTHASE 3) 5-METHYLTETRAHYDROPTEROYLTRIGLUTAMATE-HOMOCYSTEINE S-METHYLTRANSFERASE/ METHIONINE SYNTHASE |
AT1G78630 | Predictedinteraction predictiontwo hybrid | FSW = 0.0050
| Class C:plastid | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G08890 | Predictedtwo hybrid | FSW = 0.0440
| Class C:plastid | SUGAR TRANSPORTER FAMILY PROTEIN |
AT1G80030 | Predictedtwo hybrid | FSW = 0.0128
| Class C:plastid | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G02620 | Predictedtwo hybridinteraction prediction | FSW = 0.0118
| Unknown | VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN |
AT1G19910 | Predictedtwo hybridinteraction prediction | FSW = 0.0106
| Unknown | AVA-P2 ATPASE/ PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT2G27020 | Predictedinteraction predictiontwo hybrid | FSW = 0.0067
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G50850 | Predictedinteraction predictiontwo hybrid | FSW = 0.0162
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT2G16600 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G38740 | Predictedinteraction prediction | FSW = 0.0212
| Unknown | ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G43940 | Predictedtwo hybridinteraction prediction | FSW = 0.0128
| Unknown | HOT5 (SENSITIVE TO HOT TEMPERATURES 5) S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE/ S-NITROSOGLUTATHIONE REDUCTASE |
AT5G12250 | Predictedinteraction prediction | FSW = 0.0115
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0128
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G08360 | Predictedinteraction predictiontwo hybrid | FSW = 0.0513
| Unknown | 60S RIBOSOMAL PROTEIN L10A (RPL10AA) |
AT1G12920 | Predictedtwo hybridinteraction prediction | FSW = 0.0110
| Unknown | ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) TRANSLATION RELEASE FACTOR |
AT1G29260 | Predictedinteraction predictiontwo hybrid | FSW = 0.0234
| Unknown | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
AT5G06260 | Predictedtwo hybridtwo hybrid | FSW = 0.0425
| Unknown | NUCLEOLAR PROTEIN-RELATED |
AT3G55620 | Predictedtwo hybridinteraction prediction | FSW = 0.0109
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT1G28960 | Predictedinteraction predictiontwo hybrid | FSW = 0.0183
| Unknown | ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15) HYDROLASE |
AT3G10090 | Predictedinteraction prediction | FSW = 0.0154
| Unknown | 40S RIBOSOMAL PROTEIN S28 (RPS28A) |
AT5G58290 | Predictedinteraction predictiontwo hybrid | FSW = 0.0040
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT1G52920 | Predictedtwo hybridtwo hybrid | FSW = 0.0193
| Unknown | GPCR (G PROTEIN COUPLED RECEPTOR) ABSCISIC ACID BINDING / CATALYTIC |
AT1G04130 | Predictedinteraction predictiontwo hybrid | FSW = 0.0295
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT1G16180 | Predictedtwo hybrid | FSW = 0.0769
| Unknown | TMS MEMBRANE FAMILY PROTEIN / TUMOUR DIFFERENTIALLY EXPRESSED (TDE) FAMILY PROTEIN |
AT5G13240 | Predictedinteraction predictiontwo hybrid | FSW = 0.0400
| Unknown | TRANSCRIPTION REGULATOR |
AT3G21060 | Predictedtwo hybridinteraction prediction | FSW = 0.0085
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G18200 | Predictedinteraction predictiontwo hybrid | FSW = 0.0200
| Unknown | UTPGALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE/ RIBOSE-5-PHOSPHATE ADENYLYLTRANSFERASE |
AT3G06580 | Predictedinteraction predictiontwo hybrid | FSW = 0.0357
| Unknown | GALK ATP BINDING / GALACTOKINASE |
AT2G41490 | Predictedinteraction predictiontwo hybrid | FSW = 0.0183
| Unknown | GPT (UDP-GLCNAC%3ADOLICHOL+PHOSPHATE+GLCNAC-1-P+TRANSFERASE) UDP-N-ACETYLGLUCOSAMINE-DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE |
AT5G52820 | Predictedtwo hybrid | FSW = 0.0170
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
AT2G45810 | Predictedtwo hybrid | FSW = 0.0099
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G08750 | Predictedinteraction predictiontwo hybrid | FSW = 0.0111
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G10870 | Predictedtwo hybrid | FSW = 0.0440
| Unknown | AGD4 (ARF-GAP DOMAIN 4) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT4G32180 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | ATPANK2 (PANTOTHENATE KINASE 2) PANTOTHENATE KINASE |
AT1G09300 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | METALLOPEPTIDASE M24 FAMILY PROTEIN |
AT1G70790 | Predictedtwo hybrid | FSW = 0.0203
| Unknown | C2 DOMAIN-CONTAINING PROTEIN |
AT1G64590 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G01310 | Predictedinteraction predictiontwo hybrid | FSW = 0.0180
| Unknown | BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN |
AT4G00660 | Predictedinteraction prediction | FSW = 0.0059
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT3G19940 | Predictedinteraction prediction | FSW = 0.0094
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G61980 | Predictedinteraction prediction | FSW = 0.0140
| Unknown | AGD1 (ARF-GAP DOMAIN 1) ARF GTPASE ACTIVATOR/ PROTEIN BINDING / ZINC ION BINDING |
AT4G05330 | Predictedinteraction prediction | FSW = 0.0357
| Unknown | AGD13 (ARF-GAP DOMAIN 13) ARF GTPASE ACTIVATOR/ ZINC ION BINDING |
AT2G32630 | PredictedGene fusion method | FSW = 0.0385
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454