Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17790 - ( DNA-binding bromodomain-containing protein )
39 Proteins interacs with AT1G17790Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G59690 | Predictedtwo hybridAffinity Capture-MStwo hybridReconstituted ComplexAffinity Capture-Western | FSW = 0.1438
| Class C:nucleus | HISTONE H4 |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.1066
| Class C:nucleus | DNA HELICASE PUTATIVE |
AT5G22330 | PredictedAffinity Capture-MS | FSW = 0.0906
| Class C:nucleus | RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING |
AT2G44680 | PredictedAffinity Capture-MS | FSW = 0.0959
| Class C:nucleus | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT5G67270 | PredictedSynthetic Lethality | FSW = 0.0546
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G12810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0966
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G13445 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0626
| Class C:nucleus | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G44530 | PredictedSynthetic Lethality | FSW = 0.1351
| Class C:nucleus | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G64630 | PredictedGene fusion method | FSW = 0.1701
| Class C:nucleus | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G10710 | PredictedAffinity Capture-MS | FSW = 0.1501
| Class C:nucleus | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0533
| Class C:nucleus | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT3G61890 | PredictedPhenotypic Enhancement | FSW = 0.0212
| Class C:nucleus | ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G47210 | PredictedAffinity Capture-MS | FSW = 0.1270
| Class C:nucleus | MYB FAMILY TRANSCRIPTION FACTOR |
AT5G63330 | Predictedinteraction prediction | FSW = 0.0220
| Class C:nucleus | MYB FAMILY TRANSCRIPTION FACTOR |
ATCG00790 | PredictedAffinity Capture-MS | FSW = 0.0103
| Unknown | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
AT5G51050 | PredictedGene fusion method | FSW = 0.1039
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G08335 | Predictedinteraction prediction | FSW = 0.0190
| Unknown | ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT1G51450 | PredictedPhenotypic Enhancement | FSW = 0.0216
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
AT3G61740 | PredictedPhenotypic Enhancement | FSW = 0.0135
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT1G04950 | PredictedAffinity Capture-Western | FSW = 0.1420
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0604
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G52740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1870
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0974
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G55300 | PredictedAffinity Capture-Westerntwo hybridReconstituted Complex | FSW = 0.0556
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G66740 | PredictedSynthetic LethalityAffinity Capture-Western | FSW = 0.1368
| Unknown | SGA2 |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.0615
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G46320 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.1010
| Unknown | HISTONE H4 |
AT5G09740 | PredictedSynthetic Lethality | FSW = 0.1861
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10400 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.1178
| Unknown | HISTONE H3 |
AT5G42190 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0021
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G45600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.1844
| Unknown | GAS41 PROTEIN BINDING |
AT5G63610 | Predictedbiochemical | FSW = 0.0250
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G32750 | PredictedAffinity Capture-Western | FSW = 0.1678
| Unknown | HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE |
AT2G23070 | PredictedAffinity Capture-MS | FSW = 0.0363
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT3G10070 | PredictedAffinity Capture-Western | FSW = 0.0682
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT5G10390 | PredictedAffinity Capture-Western | FSW = 0.1319
| Unknown | HISTONE H3 |
AT4G18010 | Predictedinteraction prediction | FSW = 0.0224
| Unknown | AT5PTASE2 (MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2) INOSITOL-POLYPHOSPHATE 5-PHOSPHATASE |
AT1G54290 | Predictedinteraction prediction | FSW = 0.0044
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT3G53830 | PredictedGene fusion method | FSW = 0.0766
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN / UVB-RESISTANCE PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454