Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17790 - ( DNA-binding bromodomain-containing protein )

39 Proteins interacs with AT1G17790
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G59690Predicted

two hybrid

Affinity Capture-MS

two hybrid

Reconstituted Complex

Affinity Capture-Western

FSW = 0.1438

Class C:

nucleus

HISTONE H4
AT5G67630

Predicted

Affinity Capture-MS

FSW = 0.1066

Class C:

nucleus

DNA HELICASE PUTATIVE
AT5G22330

Predicted

Affinity Capture-MS

FSW = 0.0906

Class C:

nucleus

RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT2G44680

Predicted

Affinity Capture-MS

FSW = 0.0959

Class C:

nucleus

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G67270

Predicted

Synthetic Lethality

FSW = 0.0546

Class C:

nucleus

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G12810

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0966

Class C:

nucleus

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G13445

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0626

Class C:

nucleus

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G44530

Predicted

Synthetic Lethality

FSW = 0.1351

Class C:

nucleus

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G64630

Predicted

Gene fusion method

FSW = 0.1701

Class C:

nucleus

FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G10710

Predicted

Affinity Capture-MS

FSW = 0.1501

Class C:

nucleus

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G31720

Predicted

Affinity Capture-MS

FSW = 0.0533

Class C:

nucleus

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT3G61890

Predicted

Phenotypic Enhancement

FSW = 0.0212

Class C:

nucleus

ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT2G47210

Predicted

Affinity Capture-MS

FSW = 0.1270

Class C:

nucleus

MYB FAMILY TRANSCRIPTION FACTOR
AT5G63330Predicted

interaction prediction

FSW = 0.0220

Class C:

nucleus

MYB FAMILY TRANSCRIPTION FACTOR
ATCG00790Predicted

Affinity Capture-MS

FSW = 0.0103

Unknown

CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT
AT5G51050

Predicted

Gene fusion method

FSW = 0.1039

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT5G08335

Predicted

interaction prediction

FSW = 0.0190

Unknown

ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
AT1G51450

Predicted

Phenotypic Enhancement

FSW = 0.0216

Unknown

SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN
AT3G61740

Predicted

Phenotypic Enhancement

FSW = 0.0135

Unknown

SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT1G04950

Predicted

Affinity Capture-Western

FSW = 0.1420

Unknown

TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G04730Predicted

synthetic growth defect

FSW = 0.0604

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G52740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1870

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.0974

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G55300

Predicted

Affinity Capture-Western

two hybrid

Reconstituted Complex

FSW = 0.0556

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G66740

Predicted

Synthetic Lethality

Affinity Capture-Western

FSW = 0.1368

Unknown

SGA2
AT2G44580

Predicted

synthetic growth defect

FSW = 0.0615

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT3G46320Predicted

two hybrid

Affinity Capture-Western

FSW = 0.1010

Unknown

HISTONE H4
AT5G09740

Predicted

Synthetic Lethality

FSW = 0.1861

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10400Predicted

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

FSW = 0.1178

Unknown

HISTONE H3
AT5G42190

Predicted

interaction prediction

two hybrid

interologs mapping

FSW = 0.0021

Unknown

ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G45600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

FSW = 0.1844

Unknown

GAS41 PROTEIN BINDING
AT5G63610

Predicted

biochemical

FSW = 0.0250

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G32750

Predicted

Affinity Capture-Western

FSW = 0.1678

Unknown

HAF01 DNA BINDING / HISTONE ACETYLTRANSFERASE
AT2G23070

Predicted

Affinity Capture-MS

FSW = 0.0363

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT3G10070

Predicted

Affinity Capture-Western

FSW = 0.0682

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT5G10390Predicted

Affinity Capture-Western

FSW = 0.1319

Unknown

HISTONE H3
AT4G18010

Predicted

interaction prediction

FSW = 0.0224

Unknown

AT5PTASE2 (MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2) INOSITOL-POLYPHOSPHATE 5-PHOSPHATASE
AT1G54290

Predicted

interaction prediction

FSW = 0.0044

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT3G53830

Predicted

Gene fusion method

FSW = 0.0766

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN / UVB-RESISTANCE PROTEIN-RELATED

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454