Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G17980 - ( nucleotidyltransferase family protein )
37 Proteins interacs with AT1G17980| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G32850
   | Experimental | FSW = 0.0331
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
| AT2G47610
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0240
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
| AT1G06960
| PredictedAffinity Capture-MS | FSW = 0.0038
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
| AT3G06720
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0116
| Class C:nucleus | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
| AT5G35910
| PredictedSynthetic RescueAffinity Capture-WesternSynthetic Rescue | FSW = 0.0364
| Class C:nucleus | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
| AT5G54910
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2234
| Class C:nucleus | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT4G08350
| PredictedAffinity Capture-MS | FSW = 0.0240
| Class C:nucleus | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
| AT2G34210
| PredictedAffinity Capture-MS | FSW = 0.0327
| Class C:nucleus | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
| AT1G73820
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3160
| Unknown | SSU72-LIKE FAMILY PROTEIN |
| AT1G76850
| Predictedtwo hybrid | FSW = 0.0462
| Unknown | SEC5A (EXOCYST COMPLEX COMPONENT SEC5) |
| AT1G50500
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0235
| Unknown | HIT1 (HEAT-INTOLERANT 1) TRANSPORTER |
| AT5G23880
| Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationinterologs mapping | FSW = 0.4538
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
| AT5G51660
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.4042
| Unknown | CPSF160 NUCLEIC ACID BINDING |
| AT1G21170 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | SEC5B |
| AT1G17760
| PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3185
| Unknown | CSTF77 PROTEIN BINDING |
| AT1G21570
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3140
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
| AT1G49760
| Predictedbiochemical | FSW = 0.0574
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT1G61010
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.3794
| Unknown | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I) PROTEIN BINDING |
| AT1G73960
| PredictedAffinity Capture-MS | FSW = 0.1169
| Unknown | TAF2 (TBP-ASSOCIATED FACTOR 2) METALLOPEPTIDASE/ ZINC ION BINDING |
| AT2G39840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1216
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT4G04885
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1984
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
| AT5G13480
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.2563
| Unknown | FY PROTEIN BINDING |
| AT5G14530
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2784
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT5G47430
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4469
| Unknown | ZINC ION BINDING |
| AT2G21470
| Predictedinteraction predictiontwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.0693
| Unknown | SAE2 (SUMO-ACTIVATING ENZYME 2) SUMO ACTIVATING ENZYME |
| AT4G38930
| PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0418
| Unknown | UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN |
| AT5G45140
| PredictedSynthetic Rescue | FSW = 0.0111
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT5G53770
| PredictedPhenotypic Enhancement | FSW = 0.0095
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
| AT2G29400
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1616
| Unknown | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT4G17410
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4114
| Unknown | ZINC ION BINDING |
| AT1G73840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4418
| Unknown | ESP1 (ENHANCED SILENCING PHENOTYPE 1) |
| AT1G02690
| PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
| AT1G66500
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3087
| Unknown | ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN |
| AT2G21270
| Predictedinteraction predictionAffinity Capture-Westerninterologs mappingtwo hybrid | FSW = 0.0439
| Unknown | UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN |
| AT1G54440
| PredictedSynthetic RescueAffinity Capture-WesternSynthetic Rescue | FSW = 0.0412
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
| AT1G22760
| Predictedbiochemical | FSW = 0.0474
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT1G07840
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0286
| Unknown | LEUCINE ZIPPER FACTOR-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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