Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18500 - ( MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4) 2-isopropylmalate synthase )
17 Proteins interacs with AT1G18500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15200 | PredictedAffinity Capture-MS | FSW = 0.0288
| Class C:plastid | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
AT1G74040 | PredictedShared biological functionGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3623
| Class C:plastid | IMS1 (2-ISOPROPYLMALATE SYNTHASE 1) 2-ISOPROPYLMALATE SYNTHASE |
AT5G23010 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.4615
| Class C:plastid | MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) 2-ISOPROPYLMALATE SYNTHASE/ METHYLTHIOALKYLMALATE SYNTHASE |
AT3G09790 | PredictedGene fusion method | FSW = 0.1143
| Unknown | UBQ8 PROTEIN BINDING |
AT1G14320 | PredictedAffinity Capture-MS | FSW = 0.0510
| Unknown | SAC52 (SUPPRESSOR OF ACAULIS 52) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G11964 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | RNA BINDING |
AT2G19480 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING |
AT4G16830 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | NUCLEAR RNA-BINDING PROTEIN (RGGA) |
AT1G10490 | PredictedAffinity Capture-MS | FSW = 0.0566
| Unknown | UNKNOWN PROTEIN |
AT3G20630 | PredictedAffinity Capture-MS | FSW = 0.0635
| Unknown | UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G35210 | PredictedAffinity Capture-MS | FSW = 0.0320
| Unknown | RPA (ROOT AND POLLEN ARFGAP) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G22240 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | APUM8 (ARABIDOPSIS PUMILIO 8) RNA BINDING / BINDING |
AT5G62030 | PredictedAffinity Capture-MS | FSW = 0.1265
| Unknown | DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN |
AT3G10950 | PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | 60S RIBOSOMAL PROTEIN L37A (RPL37AB) |
AT4G20330 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT5G23020 | PredictedPhylogenetic profile method | FSW = 0.2857
| Unknown | IMS2 (2-ISOPROPYLMALATE SYNTHASE 2) 2-ISOPROPYLMALATE SYNTHASE/ METHYLTHIOALKYLMALATE SYNTHASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454