Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18610 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s Galactose oxidase/kelch beta-propeller (InterProIPR011043) Kelch repeat type 1 (InterProIPR006652) Kelch repeat type 2 (InterProIPR011498) Kelch-type beta propeller (InterProIPR015915) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G741501) Has 8761 Blast hits to 4412 proteins in 271 species Archae - 12 Bacteria - 304 Metazoa - 4209 Fungi - 851 Plants - 1246 Viruses - 11 Other Eukaryotes - 2128 (source NCBI BLink) )

11 Proteins interacs with AT1G18610
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G58140

Predicted

Affinity Capture-MS

FSW = 0.0482

Unknown

PHENYLALANYL-TRNA SYNTHETASE CLASS IIC FAMILY PROTEIN
AT3G48750

Predicted

biochemical

FSW = 0.0258

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT3G25800

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0197

Unknown

PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT5G54840

Predicted

Affinity Capture-Western

FSW = 0.0218

Unknown

SGP1 GTP BINDING
AT2G39840

Predicted

Affinity Capture-MS

FSW = 0.0242

Unknown

TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G39050

Predicted

Affinity Capture-MS

FSW = 0.1091

Unknown

KINESIN-RELATED PROTEIN (MKRP2)
AT5G48180

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

two hybrid

Phenotypic Enhancement

FSW = 0.2177

Unknown

NSP5 (NITRILE SPECIFIER PROTEIN 5)
AT4G12130

Predicted

two hybrid

FSW = 0.0482

Unknown

AMINOMETHYLTRANSFERASE
AT1G12270

Predicted

Gene fusion method

FSW = 0.1143

Unknown

STRESS-INDUCIBLE PROTEIN PUTATIVE
AT4G05040

Predicted

Gene fusion method

FSW = 0.1861

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT1G26900

Predicted

Gene fusion method

FSW = 0.2622

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454