Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18610 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s Galactose oxidase/kelch beta-propeller (InterProIPR011043) Kelch repeat type 1 (InterProIPR006652) Kelch repeat type 2 (InterProIPR011498) Kelch-type beta propeller (InterProIPR015915) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G741501) Has 8761 Blast hits to 4412 proteins in 271 species Archae - 12 Bacteria - 304 Metazoa - 4209 Fungi - 851 Plants - 1246 Viruses - 11 Other Eukaryotes - 2128 (source NCBI BLink) )
11 Proteins interacs with AT1G18610Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G58140 | PredictedAffinity Capture-MS | FSW = 0.0482
| Unknown | PHENYLALANYL-TRNA SYNTHETASE CLASS IIC FAMILY PROTEIN |
AT3G48750 | Predictedbiochemical | FSW = 0.0258
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G25800 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0197
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G54840 | PredictedAffinity Capture-Western | FSW = 0.0218
| Unknown | SGP1 GTP BINDING |
AT2G39840 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | TOPP4 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G39050 | PredictedAffinity Capture-MS | FSW = 0.1091
| Unknown | KINESIN-RELATED PROTEIN (MKRP2) |
AT5G48180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridPhenotypic Enhancement | FSW = 0.2177
| Unknown | NSP5 (NITRILE SPECIFIER PROTEIN 5) |
AT4G12130 | Predictedtwo hybrid | FSW = 0.0482
| Unknown | AMINOMETHYLTRANSFERASE |
AT1G12270 | PredictedGene fusion method | FSW = 0.1143
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT4G05040 | PredictedGene fusion method | FSW = 0.1861
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G26900 | PredictedGene fusion method | FSW = 0.2622
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454