Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18640 - ( PSP (3-PHOSPHOSERINE PHOSPHATASE) phosphoserine phosphatase )

24 Proteins interacs with AT1G18640
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63110

Predicted

Phenotypic Suppression

FSW = 0.1482

Class C:

plastid

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G64790Predicted

Phenotypic Suppression

FSW = 0.0638

Unknown

BINDING
AT5G13710

Predicted

Phenotypic Suppression

FSW = 0.0417

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT4G01370

Predicted

Phenotypic Enhancement

FSW = 0.0317

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.0799

Unknown

SEC22 TRANSPORTER
AT5G19180

Predicted

Phenotypic Enhancement

FSW = 0.2282

Unknown

ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME
AT1G02680

Predicted

Phenotypic Enhancement

FSW = 0.0597

Unknown

TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G24490

Predicted

Phenotypic Enhancement

FSW = 0.0469

Unknown

RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING
AT2G30050

Predicted

Synthetic Lethality

FSW = 0.0378

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G48430

Predicted

Phenotypic Enhancement

FSW = 0.0395

Unknown

REF6 (RELATIVE OF EARLY FLOWERING 6) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G07880

Predicted

Phenotypic Enhancement

FSW = 0.0690

Unknown

RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT1G66740

Predicted

Affinity Capture-MS

FSW = 0.0518

Unknown

SGA2
AT1G03140

Predicted

Phenotypic Suppression

FSW = 0.0494

Unknown

SPLICING FACTOR PRP18 FAMILY PROTEIN
AT1G55300

Predicted

Phenotypic Enhancement

FSW = 0.0332

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G60620

Predicted

Phenotypic Enhancement

FSW = 0.0230

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0365

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT3G01340

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0390

Unknown

PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G18860

Predicted

Phenotypic Suppression

FSW = 0.1235

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0515

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.1276

Unknown

BINDING
AT1G34150

Predicted

Phenotypic Enhancement

FSW = 0.1361

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT3G10070

Predicted

Phenotypic Enhancement

FSW = 0.0645

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT4G33240

Predicted

Phenotypic Suppression

FSW = 0.1004

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT3G06300

Predicted

two hybrid

FSW = 0.0290

Unknown

AT-P4H-2 (A THALIANA P4H ISOFORM 2) OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN 2-OXOGLUTARATE AS ONE DONOR AND INCORPORATION OF ONE ATOM EACH OF OXYGEN INTO BOTH DONORS / PROCOLLAGEN-PROLINE 4-DIOXYGEN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454