Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G18640 - ( PSP (3-PHOSPHOSERINE PHOSPHATASE) phosphoserine phosphatase )
24 Proteins interacs with AT1G18640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63110 | PredictedPhenotypic Suppression | FSW = 0.1482
| Class C:plastid | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT1G64790 | PredictedPhenotypic Suppression | FSW = 0.0638
| Unknown | BINDING |
AT5G13710 | PredictedPhenotypic Suppression | FSW = 0.0417
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT4G01370 | PredictedPhenotypic Enhancement | FSW = 0.0317
| Unknown | ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.0799
| Unknown | SEC22 TRANSPORTER |
AT5G19180 | PredictedPhenotypic Enhancement | FSW = 0.2282
| Unknown | ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME |
AT1G02680 | PredictedPhenotypic Enhancement | FSW = 0.0597
| Unknown | TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0469
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT2G30050 | PredictedSynthetic Lethality | FSW = 0.0378
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G48430 | PredictedPhenotypic Enhancement | FSW = 0.0395
| Unknown | REF6 (RELATIVE OF EARLY FLOWERING 6) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G07880 | PredictedPhenotypic Enhancement | FSW = 0.0690
| Unknown | RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN |
AT1G66740 | PredictedAffinity Capture-MS | FSW = 0.0518
| Unknown | SGA2 |
AT1G03140 | PredictedPhenotypic Suppression | FSW = 0.0494
| Unknown | SPLICING FACTOR PRP18 FAMILY PROTEIN |
AT1G55300 | PredictedPhenotypic Enhancement | FSW = 0.0332
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G60620 | PredictedPhenotypic Enhancement | FSW = 0.0230
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0365
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT3G01340 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0390
| Unknown | PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G18860 | PredictedPhenotypic Suppression | FSW = 0.1235
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0515
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.1276
| Unknown | BINDING |
AT1G34150 | PredictedPhenotypic Enhancement | FSW = 0.1361
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT3G10070 | PredictedPhenotypic Enhancement | FSW = 0.0645
| Unknown | TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT4G33240 | PredictedPhenotypic Suppression | FSW = 0.1004
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT3G06300 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | AT-P4H-2 (A THALIANA P4H ISOFORM 2) OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN 2-OXOGLUTARATE AS ONE DONOR AND INCORPORATION OF ONE ATOM EACH OF OXYGEN INTO BOTH DONORS / PROCOLLAGEN-PROLINE 4-DIOXYGEN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454