Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G19050 - ( ARR7 (RESPONSE REGULATOR 7) transcription regulator/ two-component response regulator )

17 Proteins interacs with AT1G19050
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G42020

Experimental

two hybrid

FSW = 0.0308

Class A:

nucleus

Class B:

vacuole

plasma membrane

endoplasmic reticulum

BIP2 ATP BINDING
AT5G39340

Experimental

pull down

two hybrid

two hybrid

FSW = 0.2069

Class A:

nucleus

Class B:

cytosol

AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) HISTIDINE PHOSPHOTRANSFER KINASE
AT5G43170

Experimental

two hybrid

FSW = 0.1905

Class A:

nucleus

Class D:

nucleus (p = 0.78)

AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3) DNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR/ ZINC ION BINDING
AT1G68790

Experimental

two hybrid

FSW = 0.1143

Class A:

nucleus

LINC3 (LITTLE NUCLEI3)
AT2G19480

Experimental

two hybrid

FSW = 0.0178

Class B:

plasma membrane

nucleus

Class D:

nucleus (p = 0.78)

NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT5G08720

Experimental

two hybrid

FSW = 0.1319

Class B:

nucleus

mitochondrion

Class D:

nucleus (p = 0.78)

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION CONTAINS INTERPRO DOMAIN/S STREPTOMYCES CYCLASE/DEHYDRASE (INTERPROIPR005031) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G016502) HAS 578 BLAST HITS TO 324 PROTEINS IN 67 SPECIES ARCHAE - 1 BACTERIA - 248 METAZOA - 1 FUNGI - 0 PLANTS - 59 VIRUSES - 0 OTHER EUKARYOTES - 269 (SOURCE NCBI BLINK)
AT3G29350

Experimental

pull down

two hybrid

two hybrid

FSW = 0.2240

Class B:

nucleus

cytosol

Class D:

nucleus (p = 0.78)

AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2) HISTIDINE PHOSPHOTRANSFER KINASE/ PROTEIN BINDING / SIGNAL TRANSDUCER
AT1G67710

Experimental

pull down

FSW = 0.1015

Class D:

nucleus (p = 0.78)

ARR11 (RESPONSE REGULATOR 11) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR
AT2G41310

Experimental

FSW = 0.4000

Class D:

nucleus (p = 0.78)

ATRR3 (RESPONSE REGULATOR 3) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT3G57040

Experimental

FSW = 0.3920

Class D:

nucleus (p = 0.78)

ARR9 (RESPONSE REGULATOR 9) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT5G48630

Experimental

two hybrid

FSW = 0.0170

Unknown

CYCLIN FAMILY PROTEIN
AT3G21510

Experimental

two hybrid

two hybrid

FSW = 0.2143

Unknown

AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) HISTIDINE PHOSPHOTRANSFER KINASE
AT1G79690

Experimental

pull down

two hybrid

FSW = 0.2000

Unknown

ATNUDT3 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 3) HYDROLASE
AT1G27320

Experimental

FSW = 0.0619

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT2G31160

Experimental

two hybrid

FSW = 0.1600

Unknown

LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)
AT5G62920

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.3344

Class C:

nucleus

ARR6 (RESPONSE REGULATOR 6) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR
AT3G09890

Predicted

Gene fusion method

FSW = 0.0364

Unknown

ANKYRIN REPEAT FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454