Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G19140 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN ubiquinone biosynthetic process LOCATED IN mitochondrion EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s COQ9 (InterProIPR013718) Ubiquinone biosynthesis protein COQ9 (InterProIPR012762) Has 598 Blast hits to 598 proteins in 175 species Archae - 0 Bacteria - 149 Metazoa - 114 Fungi - 60 Plants - 22 Viruses - 0 Other Eukaryotes - 253 (source NCBI BLink) )

6 Proteins interacs with AT1G19140
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G01850

Predicted

biochemical

Affinity Capture-Western

FSW = 0.0684

Unknown

 SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT5G49060

Predicted

Affinity Capture-MS

FSW = 0.0711

Unknown

 DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT4G29020

Predicted

two hybrid

FSW = 0.0847

Unknown

 GLYCINE-RICH PROTEIN
AT3G22860

Predicted

Reconstituted Complex

FSW = 0.0766

Unknown

 TIF3C2 TRANSLATION INITIATION FACTOR
AT5G16170

Predicted

synthetic growth defect

FSW = 0.0856

Unknown

 UNKNOWN PROTEIN
AT5G19150

Predicted

biochemical

FSW = 0.0360

Unknown

 CARBOHYDRATE KINASE FAMILY

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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