Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G19350 - ( BES1 (BRI1-EMS-SUPPRESSOR 1) protein binding / transcription factor/ transcription regulator )

12 Proteins interacs with AT1G19350
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G10450

Experimental

two hybrid

FSW = 0.0201

Class D:

nucleus (p = 0.78)

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G34460

Experimental

one hybrid

FSW = 0.0142

Class D:

nucleus (p = 0.78)

AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G55310

Experimental

interaction detection method

FSW = 0.0561

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

SR33 RNA BINDING / PROTEIN BINDING
AT5G13300

Experimental

pull down

FSW = 0.0314

Class D:

nucleus (p = 0.78)

SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING
AT4G18710

Experimental

pull down

biochemical

two hybrid

FSW = 0.0833

Class D:

nucleus (p = 0.78)

BIN2 (BRASSINOSTEROID-INSENSITIVE 2) GLYCOGEN SYNTHASE KINASE 3/ KINASE/ PROTEIN KINASE
AT3G48430

Experimental

pull down

FSW = 0.1406

Class D:

nucleus (p = 0.78)

REF6 (RELATIVE OF EARLY FLOWERING 6) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G75080

Experimental

two hybrid

FSW = 0.2689

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

BZR1 (BRASSINAZOLE-RESISTANT 1) DNA BINDING / TRANSCRIPTION REGULATOR/ TRANSCRIPTION REPRESSOR
AT5G08130

Experimental

two hybrid

pull down

Reconstituted Complex

FSW = 0.0504

Unknown

BIM1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G38860

Experimental

pull down

Reconstituted Complex

FSW = 0.0426

Unknown

BIM3 (BES1-INTERACTING MYC-LIKE PROTEIN 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G11390

Experimental

one hybrid

FSW = 0.1023

Unknown

UNKNOWN PROTEIN
AT1G69010

Experimental

Reconstituted Complex

FSW = 0.0426

Unknown

BIM2 (BES1-INTERACTING MYC-LIKE PROTEIN 2) DNA BINDING / TRANSCRIPTION FACTOR
AT1G32130

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0209

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454