Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G19850 - ( MP (MONOPTEROS) transcription factor )
11 Proteins interacs with AT1G19850Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G04550 | Experimentaltwo hybridtwo hybrid | FSW = 0.1861
| Class A:nucleusClass D:nucleus (p = 0.78) | IAA12 (AUXIN-INDUCED PROTEIN 12) TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT3G15540 | Experimentalfluorescence acceptor donor pairfluorescence acceptor donor pair | FSW = 0.2395
| Class A:nucleusClass D:nucleus (p = 0.78) | IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) TRANSCRIPTION FACTOR |
AT5G20730 | Experimentaltwo hybridfluorescence acceptor donor pairfluorescence acceptor donor pairtwo hybridfluorescence acceptor donor pair | FSW = 0.5027
| Class A:nucleusClass D:nucleus (p = 0.78) | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT4G14550 | Experimental | FSW = 0.3297
| Class A:nucleus | IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT1G19220 | Experimental | FSW = 0.4860
| Class D:nucleus (p = 0.78)mitochondrion (p = 0.82) | ARF19 (AUXIN RESPONSE FACTOR 19) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G04240 | Experimental | FSW = 0.4148
| Class D:nucleus (p = 0.78) | SHY2 (SHORT HYPOCOTYL 2) TRANSCRIPTION FACTOR |
AT4G14560 | Experimental | FSW = 0.4689
| Class D:nucleus (p = 0.78) | IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G52830 | Experimental | FSW = 0.2395
| Class D:nucleus (p = 0.78) | IAA6 (INDOLE-3-ACETIC ACID 6) TRANSCRIPTION FACTOR |
AT2G33310 | Experimental | FSW = 0.2395
| Class D:nucleus (p = 0.78) | IAA13 TRANSCRIPTION FACTOR |
AT5G37020 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.6805
| Class C:nucleus | ARF8 (AUXIN RESPONSE FACTOR 8) TRANSCRIPTION FACTOR |
AT1G30330 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3456
| Class C:nucleus | ARF6 (AUXIN RESPONSE FACTOR 6) TRANSCRIPTION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454