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AT1G20010 - ( TUB5 structural constituent of cytoskeleton )

57 Proteins interacs with AT1G20010

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G50960	Experimental	FSW = 0.1077	Unknown	PLP3A (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING
AT1G07660	Predicted Affinity Capture-MS	FSW = 0.0460	Class C: vacuole plastid plasma membrane	HISTONE H4
AT1G04820	Predicted two hybrid Synthetic Rescue two hybrid Enriched domain pair Gene neighbors method Co-expression	FSW = 0.3105	Class C: vacuole plastid plasma membrane	TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G20890	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.3050	Class C: vacuole plasma membrane	TUB9 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT2G29550	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.3188	Class C: vacuole plasma membrane	TUB7 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G01690	Predicted Synthetic Lethality	FSW = 0.0336	Class C: vacuole	BINDING
AT1G75780	Predicted Enriched domain pair Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.2806	Class C: vacuole	TUB1 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT1G64790	Predicted Affinity Capture-MS	FSW = 0.0933	Class C: vacuole	BINDING
AT2G43750	Predicted Affinity Capture-MS	FSW = 0.0204	Class C: plastid	OASB (O-ACETYLSERINE (THIOL) LYASE B) CYSTEINE SYNTHASE
AT1G67120	Predicted Affinity Capture-MS	FSW = 0.1075	Class C: plastid	ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING
AT3G49830	Predicted Affinity Capture-MS	FSW = 0.1169	Class C: plastid	DNA HELICASE-RELATED
AT1G71440	Predicted Synthetic Lethality	FSW = 0.2593	Class C: plastid	PFI (PFIFFERLING)
AT1G17745	Predicted two hybrid	FSW = 0.0111	Class C: plastid	PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE
AT5G62690	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.2865	Class C: plasma membrane	TUB2 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT5G12250	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.6602	Class C: plasma membrane	TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G23860	Predicted Enriched domain pair Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.3050	Class C: plasma membrane	TUB8 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G44340	Predicted Enriched domain pair Phylogenetic profile method Co-expression	FSW = 0.3429	Class C: plasma membrane	TUB4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G61650	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.2768	Class C: plasma membrane	TUBG1 (GAMMA-TUBULIN) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT4G38600	Predicted Affinity Capture-MS	FSW = 0.0369	Class C: plasma membrane	KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE
AT3G12050	Predicted Affinity Capture-MS	FSW = 0.0843	Class C: peroxisome	AHA1 DOMAIN-CONTAINING PROTEIN
AT3G10220	Predicted co-fractionation Co-fractionation	FSW = 0.1125	Unknown	TUBULIN FOLDING COFACTOR B
AT2G31660	Predicted Affinity Capture-MS	FSW = 0.0735	Unknown	SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER
AT4G05190	Predicted Reconstituted Complex Enriched domain pair Co-expression	FSW = 0.1785	Unknown	ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR
AT1G55520	Predicted Affinity Capture-MS	FSW = 0.0091	Unknown	TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT5G05620	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.1594	Unknown	GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE
AT3G09810	Predicted Affinity Capture-MS	FSW = 0.0378	Unknown	ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT2G22290	Predicted Synthetic Lethality	FSW = 0.0022	Unknown	ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING
AT4G23860	Predicted Phenotypic Enhancement	FSW = 0.0613	Unknown	PHD FINGER PROTEIN-RELATED
AT2G35630	Predicted Synthetic Rescue two hybrid	FSW = 0.0900	Unknown	MOR1 (MICROTUBULE ORGANIZATION 1) MICROTUBULE BINDING
AT4G13460	Predicted synthetic growth defect	FSW = 0.0169	Unknown	SUVH9 HISTONE-LYSINE N-METHYLTRANSFERASE/ ZINC ION BINDING
AT4G26840	Predicted Affinity Capture-MS	FSW = 0.0088	Unknown	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT2G36200	Predicted Synthetic Rescue Enriched domain pair Co-expression	FSW = 0.1190	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT1G79750	Predicted Affinity Capture-MS	FSW = 0.0806	Unknown	ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT3G25980	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0775	Unknown	MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT2G46520	Predicted Affinity Capture-MS	FSW = 0.0257	Unknown	CELLULAR APOPTOSIS SUSCEPTIBILITY PROTEIN PUTATIVE / IMPORTIN-ALPHA RE-EXPORTER PUTATIVE
AT3G20050	Predicted Phenotypic Enhancement	FSW = 0.0265	Unknown	ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT3G60740	Predicted Phenotypic Suppression	FSW = 0.1158	Unknown	TTN1 (TITAN 1) TUBULIN BINDING
AT4G27960	Predicted Phenotypic Enhancement	FSW = 0.0104	Unknown	UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT3G19240	Predicted Affinity Capture-MS	FSW = 0.0604	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN N-TERMINAL PROTEIN MYRISTOYLATION LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) VACUOLAR IMPORT AND DEGRADATION VID27-RELATED (INTERPROIPR013863) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DEM PROTEIN-RELATED / DEFECTIVE EMBRYO AND MERISTEMS PROTEIN-RELATED (TAIRAT4G334001) HAS 206 BLAST HITS TO 202 PROTEINS IN 88 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 11 FUNGI - 117 PLANTS - 38 VIRUSES - 0 OTHER EUKARYOTES - 40 (SOURCE NCBI BLINK)
AT3G11910	Predicted Affinity Capture-MS	FSW = 0.0220	Unknown	UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE
AT3G11830	Predicted Affinity Capture-MS	FSW = 0.0512	Unknown	CHAPERONIN PUTATIVE
AT3G03110	Predicted Affinity Capture-MS	FSW = 0.0368	Unknown	XPO1B BINDING / PROTEIN TRANSPORTER
AT2G39770	Predicted Affinity Capture-MS	FSW = 0.0688	Unknown	CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT1G55810	Predicted Affinity Capture-MS	FSW = 0.0217	Unknown	URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G47290	Predicted Affinity Capture-MS	FSW = 0.0543	Unknown	AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1) 3-BETA-HYDROXY-DELTA5-STEROID DEHYDROGENASE/ STEROL-4-ALPHA-CARBOXYLATE 3-DEHYDROGENASE (DECARBOXYLATING)
AT1G29940	Predicted Affinity Capture-MS	FSW = 0.0457	Unknown	NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT2G30410	Predicted two hybrid Reconstituted Complex Reconstituted Complex Affinity Capture-Western interologs mapping Reconstituted Complex Synthetic Rescue	FSW = 0.1783	Unknown	KIS (KIESEL) UNFOLDED PROTEIN BINDING
AT2G44580	Predicted Synthetic Lethality	FSW = 0.0535	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT3G22480	Predicted Synthetic Lethality	FSW = 0.0854	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT1G51710	Predicted Synthetic Lethality	FSW = 0.0245	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT2G33560	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0748	Unknown	SPINDLE CHECKPOINT PROTEIN-RELATED
AT5G23290	Predicted Synthetic Lethality	FSW = 0.0923	Unknown	PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING
AT1G29990	Predicted Synthetic Lethality	FSW = 0.0805	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G13460	Predicted Synthetic Rescue	FSW = 0.0227	Unknown	SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT2G28620	Predicted Synthetic Rescue Enriched domain pair Co-expression	FSW = 0.0860	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT2G44140	Predicted two hybrid	FSW = 0.0340	Unknown	AUTOPHAGY 4A (APG4A)
AT5G62700	Predicted Enriched domain pair Phylogenetic profile method	FSW = 0.2116	Unknown	TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT1G20010 - ( TUB5 structural constituent of cytoskeleton )

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Fasta sequences:

Quick help

FSW

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PEP

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