Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G20090 - ( ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP binding )

63 Proteins interacs with AT1G20090
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G44690

Experimental

FSW = 0.1467

Class A:

plasma membrane

Class B:

cytoskeleton

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 ARAC9 GTP BINDING
AT4G35950

Experimental

FSW = 0.1698

Class A:

plasma membrane

Class B:

cytoskeleton

Class D:

cytosol (p = 0.67)

 ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING
AT5G16490

Experimental

fluorescence acceptor donor pair

FSW = 0.0300

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) PROTEIN BINDING
AT5G18410

Experimental

two hybrid

FSW = 0.0522

Unknown

 PIR121 TRANSCRIPTION ACTIVATOR
ETG26999Experimental

two hybrid

FSW = 0.0144

Unknown

 PIR121 TRANSCRIPTION ACTIVATOR
AT4G28556

Experimental

in vitro

FSW = 0.0142

Unknown

 RIC7
AT1G61000

Predicted

interaction prediction

two hybrid

FSW = 0.0084

Class C:

plasma membrane

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK)
AT5G62880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0869

Class C:

plasma membrane

 ARAC10 GTP BINDING
AT1G75840

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1131

Class C:

plasma membrane

 ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE
AT1G08560

Predicted

interologs mapping

FSW = 0.0349

Class C:

plasma membrane

 SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR
AT4G28950

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1097

Class C:

plasma membrane

 ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT5G52640

Predicted

Synthetic Lethality

FSW = 0.0049

Class C:

plasma membrane

 ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G04750

Predicted

synthetic growth defect

FSW = 0.0542

Class C:

plasma membrane

 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G45970

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1111

Class C:

plasma membrane

 ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING
AT3G48040

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2151

Class C:

plasma membrane

 ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE
AT3G09900

Predicted

Synthetic Lethality

interologs mapping

Synthetic Lethality

FSW = 0.0183

Class C:

plasma membrane

 ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING
AT4G35020

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2645

Class C:

plasma membrane

 ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT1G20970Predicted

Synthetic Lethality

FSW = 0.0527

Class C:

plasma membrane

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN PLASMA MEMBRANE VACUOLE EXPRESSED IN GUARD CELL CULTURED CELL BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PPI1 (PROTON PUMP INTERACTOR 1) PROTEIN BINDING (TAIRAT4G275001) HAS 53409 BLAST HITS TO 33585 PROTEINS IN 1572 SPECIES ARCHAE - 464 BACTERIA - 7066 METAZOA - 25076 FUNGI - 5173 PLANTS - 1740 VIRUSES - 257 OTHER EUKARYOTES - 13633 (SOURCE NCBI BLINK)
AT2G19480

Predicted

Synthetic Rescue

FSW = 0.0302

Class C:

plasma membrane

 NAP12 (NUCLEOSOME ASSEMBLY PROTEIN 12) DNA BINDING
AT1G44170

Predicted

interologs mapping

FSW = 0.0527

Unknown

 ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0189

Unknown

 60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0842

Unknown

 ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT3G23940

Predicted

Affinity Capture-MS

FSW = 0.0583

Unknown

 DEHYDRATASE FAMILY
AT2G44680

Predicted

Co-crystal Structure

Co-crystal Structure

two hybrid

two hybrid

Affinity Capture-MS

FSW = 0.0660

Unknown

 CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT2G26150

Predicted

interologs mapping

Synthetic Rescue

FSW = 0.0168

Unknown

 ATHSFA2 DNA BINDING / TRANSCRIPTION FACTOR
AT3G05520

Predicted

Synthetic Lethality

FSW = 0.0483

Unknown

 F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN
AT1G10130

Predicted

Synthetic Lethality

FSW = 0.0058

Unknown

 ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT3G51300

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.1605

Unknown

 ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING
AT2G17800

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1461

Unknown

 ARAC1 GTP BINDING
AT3G42830

Predicted

Synthetic Lethality

FSW = 0.0277

Unknown

 RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE
AT3G07880

Predicted

interaction prediction

interologs mapping

Enriched domain pair

Co-expression

FSW = 0.0988

Unknown

 RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT1G10210

Predicted

interologs mapping

FSW = 0.0433

Unknown

 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G10090

Predicted

Synthetic Lethality

FSW = 0.0434

Unknown

 UNKNOWN PROTEIN
AT1G25155Predicted

synthetic growth defect

FSW = 0.0708

Unknown

 ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G26690

Predicted

Phenotypic Enhancement

FSW = 0.0575

Unknown

 EMP24/GP25L/P24 FAMILY PROTEIN
AT1G34580

Predicted

Affinity Capture-Western

Synthetic Rescue

FSW = 0.0391

Unknown

 MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G35350

Predicted

synthetic growth defect

FSW = 0.0798

Unknown

 LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G60970

Predicted

two hybrid

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.0920

Unknown

 CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT2G29190

Predicted

interologs mapping

FSW = 0.0238

Unknown

 APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT3G18660

Predicted

synthetic growth defect

FSW = 0.0485

Unknown

 PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G22290

Predicted

synthetic growth defect

FSW = 0.0832

Unknown

 UNKNOWN PROTEIN
AT3G24010

Predicted

Synthetic Lethality

FSW = 0.0723

Unknown

 ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G53030

Predicted

Synthetic Lethality

FSW = 0.0813

Unknown

 SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE
AT4G12620

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.1436

Unknown

 ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING
AT4G27130

Predicted

synthetic growth defect

FSW = 0.0693

Unknown

 EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT2G16740

Predicted

interologs mapping

FSW = 0.0155

Unknown

 UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT2G28060

Predicted

Affinity Capture-Western

FSW = 0.0805

Unknown

 PROTEIN KINASE-RELATED
AT2G28720

Predicted

Affinity Capture-MS

FSW = 0.0122

Unknown

 HISTONE H2B PUTATIVE
AT3G51110

Predicted

interologs mapping

FSW = 0.0325

Unknown

 CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT1G12070

Predicted

Affinity Capture-Western

two hybrid

Enriched domain pair

Co-expression

FSW = 0.1093

Unknown

 RHO GDP-DISSOCIATION INHIBITOR FAMILY PROTEIN
AT1G09460

Predicted

interologs mapping

FSW = 0.0090

Unknown

 GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED
AT4G05320

Predicted

Reconstituted Complex

FSW = 0.0165

Unknown

 UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT3G56640

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.0516

Unknown

 EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT1G71790

Predicted

Synthetic Lethality

FSW = 0.0303

Unknown

 F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN
AT1G49540

Predicted

Synthetic Lethality

FSW = 0.0260

Unknown

 NUCLEOTIDE BINDING
AT5G50320

Predicted

Synthetic Lethality

FSW = 0.0264

Unknown

 ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G55130

Predicted

Synthetic Lethality

FSW = 0.0235

Unknown

 CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE
AT1G76170Predicted

Synthetic Lethality

FSW = 0.0146

Unknown

 ATP BINDING
AT3G05870

Predicted

Synthetic Lethality

FSW = 0.0215

Unknown

 APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G77050Predicted

Synthetic Lethality

FSW = 0.0093

Unknown

 APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G03430

Predicted

Synthetic Lethality

FSW = 0.0536

Unknown

 PHOSPHOADENOSINE PHOSPHOSULFATE (PAPS) REDUCTASE FAMILY PROTEIN
AT1G60620

Predicted

Synthetic Lethality

FSW = 0.0149

Unknown

 ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G50370

Predicted

Synthetic Lethality

FSW = 0.0145

Unknown

 SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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