Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G20140 - ( ASK4 (ARABIDOPSIS SKP1-LIKE 4) protein binding / ubiquitin-protein ligase )
61 Proteins interacs with AT1G20140Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G57360 | Experimentaltwo hybrid | FSW = 0.2516
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G18915 | Experimentaltwo hybrid | FSW = 0.1323
| Class A:nucleusClass B:cytosolClass D:cytosol (p = 0.67) | LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G67340 | Experimental | FSW = 0.1034
| Class A:nucleusClass D:mitochondrion (p = 0.82)cytosol (p = 0.67) | ZINC FINGER (MYND TYPE) FAMILY PROTEIN / F-BOX FAMILY PROTEIN |
AT4G02440 | Experimentalprotein tri hybridtwo hybridfluorescence acceptor donor pair | FSW = 0.2397
| Class A:nucleusClass D:cytosol (p = 0.67) | EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) UBIQUITIN-PROTEIN LIGASE |
AT1G55610 | Experimental | FSW = 0.0157
| Class B:plasma membranenucleusClass D:cytosol (p = 0.67) | BRL1 (BRI 1 LIKE) KINASE |
AT4G02570 | Experimentalprotein tri hybridtwo hybrid | FSW = 0.2022
| Class D:cytosol (p = 0.67) | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT1G76920 | Experimentaltwo hybrid | FSW = 0.0705
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT4G02740 | Experimentaltwo hybrid | FSW = 0.2397
| Unknown | CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G027602) HAS 1691 BLAST HITS TO 1200 PROTEINS IN 170 SPECIES ARCHAE - 2 BACTERIA - 109 METAZOA - 687 FUNGI - 197 PLANTS - 199 VIRUSES - 23 OTHER EUKARYOTES - 474 (SOURCE NCBI BLINK) |
AT3G26000 | Experimentaltwo hybrid | FSW = 0.2286
| Unknown | F-BOX FAMILY PROTEIN |
AT2G01620 | Experimentaltwo hybrid | FSW = 0.2173
| Unknown | MEE11 (MATERNAL EFFECT EMBRYO ARREST 11) |
AT4G08980 | Experimentaltwo hybrid | FSW = 0.1291
| Unknown | F-BOX FAMILY PROTEIN (FBW2) |
AT3G62230 | Experimental | FSW = 0.0148
| Unknown | F-BOX FAMILY PROTEIN |
AT3G59000 | Experimental | FSW = 0.0155
| Unknown | F-BOX FAMILY PROTEIN |
AT4G27050 | Experimental | FSW = 0.0150
| Unknown | F-BOX FAMILY PROTEIN |
AT1G06110 | Experimental | FSW = 0.1034
| Unknown | SKIP16 (SKP1/ASK-INTERACTING PROTEIN 16) PROTEIN BINDING |
AT1G21760 | Experimental | FSW = 0.0759
| Unknown | FBP7 (F-BOX PROTEIN 7) |
AT4G24210 | Experimentaltwo hybrid | FSW = 0.1741
| Unknown | SLY1 (SLEEPY1) |
AT5G48170 | Experimentaltwo hybrid | FSW = 0.2029
| Unknown | SLY2 (SLEEPY2) |
AT4G08500 | Experimentalone hybrid | FSW = 0.0037
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT1G56070 | PredictedAffinity Capture-Western | FSW = 0.0079
| Class C:nucleus | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT1G75950 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.2793
| Class C:nucleus | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G60020 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4154
| Class C:nucleus | ASK5 (ARABIDOPSIS SKP1-LIKE 5) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G13980 | Predictedbiochemical | FSW = 0.0047
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G07370 | Predictedtwo hybrid | FSW = 0.0043
| Class C:nucleus | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G06230 | Predictedtwo hybrid | FSW = 0.0086
| Class C:nucleus | GTE4 (GLOBAL TRANSCRIPTION FACTOR GROUP E 4) DNA BINDING |
AT1G78900 | PredictedAffinity Capture-Western | FSW = 0.0307
| Unknown | VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G20260 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0183
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G58730 | PredictedAffinity Capture-Western | FSW = 0.0631
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD) |
AT3G22630 | PredictedAffinity Capture-Western | FSW = 0.0064
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0049
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G64200 | PredictedAffinity Capture-Western | FSW = 0.0574
| Unknown | VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G31230 | Predictedsynthetic growth defect | FSW = 0.0346
| Unknown | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I) ASPARTATE KINASE/ HOMOSERINE DEHYDROGENASE |
AT2G41380 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.0100
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT3G42830 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.0285
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0037
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G22920 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | CSN5A (COP9 SIGNALOSOME 5A) |
AT1G17470 | PredictedPhenotypic Enhancement | FSW = 0.0192
| Unknown | ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1) GTP BINDING / GTPASE |
AT4G27180 | Predictedinterologs mapping | FSW = 0.0147
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT1G60730 | PredictedAffinity Capture-MS | FSW = 0.0044
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G51830 | PredictedPhenotypic Enhancement | FSW = 0.0161
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT1G26830 | Predictedtwo hybridtwo hybridtwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexSynthetic Lethalitytwo hybrid | FSW = 0.0430
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G01720 | Predictedtwo hybridtwo hybridtwo hybridReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerninterologs mappinginterologs mappingReconstituted Complextwo hybridEnriched domain pair | FSW = 0.0393
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT4G11260 | Predictedtwo hybridtwo hybridReconstituted ComplexReconstituted Complexinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSReconstituted Complextwo hybrid | FSW = 0.0462
| Unknown | SGT1B PROTEIN BINDING |
AT5G09290 | PredictedSynthetic Lethality | FSW = 0.0222
| Unknown | 3(2)5-BISPHOSPHATE NUCLEOTIDASE PUTATIVE / INOSITOL POLYPHOSPHATE 1-PHOSPHATASE PUTATIVE |
AT2G40116 | PredictedSynthetic Lethality | FSW = 0.0330
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT3G43750 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G10230 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile method | FSW = 0.3600
| Unknown | ASK18 (ARABIDOPSIS SKP1-LIKE 18) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G25700 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4700
| Unknown | ASK3 (ARABIDOPSIS SKP1-LIKE 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03160 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3546
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G21830 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4500
| Unknown | ASK8 (ARABIDOPSIS SKP1-LIKE 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G21850 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4337
| Unknown | ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03170 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4541
| Unknown | ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G34210 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4980
| Unknown | ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G21860 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4263
| Unknown | ASK10 (ARABIDOPSIS SKP1-LIKE 10) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03190 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4154
| Unknown | ASK16 (ARABIDOPSIS SKP1-LIKE 16) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G34470 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4065
| Unknown | ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42190 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.2738
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G20160 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.3955
| Unknown | MEO (MEIDOS) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G60010 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4586
| Unknown | ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G25650 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.4348
| Unknown | ASK15 (ARABIDOPSIS SKP1-LIKE 15) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454