Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G20510 - ( OPCL1 (OPC-80 COA LIGASE1) 4-coumarate-CoA ligase )

16 Proteins interacs with AT1G20510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63380

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7516

Class C:

peroxisome

4-COUMARATE--COA LIGASE FAMILY PROTEIN / 4-COUMAROYL-COA SYNTHASE FAMILY PROTEIN
AT4G05160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8430

Class C:

peroxisome

4-COUMARATE--COA LIGASE PUTATIVE / 4-COUMAROYL-COA SYNTHASE PUTATIVE
AT5G16370

Predicted

Phylogenetic profile method

FSW = 0.2722

Class C:

peroxisome

AAE5 (ACYL ACTIVATING ENZYME 5) CATALYTIC
AT1G20480

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7639

Class C:

peroxisome

4-COUMARATE--COA LIGASE FAMILY PROTEIN / 4-COUMAROYL-COA SYNTHASE FAMILY PROTEIN
AT1G65890

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2609

Unknown

AAE12 (ACYL ACTIVATING ENZYME 12) CATALYTIC
AT1G76290

Predicted

Gene fusion method

Gene neighbors method

Co-expression

FSW = 0.1604

Unknown

AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN
AT3G21230

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7202

Unknown

4CL5 (4-COUMARATECOA LIGASE 5) 4-COUMARATE-COA LIGASE
AT1G62940

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7202

Unknown

ACOS5 (ACYL-COA SYNTHETASE 5) 4-COUMARATE-COA LIGASE/ LONG-CHAIN-FATTY-ACID-COA LIGASE/ MEDIUM-CHAIN-FATTY-ACID-COA LIGASE
AT1G65060

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.8276

Unknown

4CL3 4-COUMARATE-COA LIGASE
AT3G21240

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8048

Unknown

4CL2 (4-COUMARATECOA LIGASE 2) 4-COUMARATE-COA LIGASE
AT5G38120

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7356

Unknown

4-COUMARATE--COA LIGASE FAMILY PROTEIN / 4-COUMAROYL-COA SYNTHASE FAMILY PROTEIN
AT3G16170

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4472

Unknown

ACYL-ACTIVATING ENZYME 13 (AAE13)
AT4G19010

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6914

Unknown

4-COUMARATE--COA LIGASE FAMILY PROTEIN / 4-COUMAROYL-COA SYNTHASE FAMILY PROTEIN
AT1G51680

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6914

Unknown

4CL1 (4-COUMARATECOA LIGASE 1) 4-COUMARATE-COA LIGASE
AT5G52820

Predicted

Gene fusion method

FSW = 0.0450

Unknown

WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE
AT3G60050

Predicted

Gene fusion method

FSW = 0.2000

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454