Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G20575 - ( dolichyl-phosphate beta-D-mannosyltransferase putative / dolichol-phosphate mannosyltransferase putative / mannose-P-dolichol synthase putative )
32 Proteins interacs with AT1G20575Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G19640 | Predictedinterologs mapping | FSW = 0.0544
| Unknown | ARA7 GTP BINDING |
AT1G31780 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1205
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0516
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT4G34460 | PredictedSynthetic Rescue | FSW = 0.0061
| Unknown | AGB1 (GTP BINDING PROTEIN BETA 1) GTPASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G51460 | PredictedColocalization | FSW = 0.0891
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.1185
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT2G17520 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0787
| Unknown | IRE1A ENDORIBONUCLEASE/ KINASE |
AT5G58000 | Predictedinterologs mapping | FSW = 0.0786
| Unknown | LOCATED IN ENDOPLASMIC RETICULUM CHLOROPLAST CONTAINS INTERPRO DOMAIN/S RETICULON (INTERPROIPR003388) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RETICULON FAMILY PROTEIN (TAIRAT4G284301) HAS 1047 BLAST HITS TO 1034 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 715 FUNGI - 46 PLANTS - 58 VIRUSES - 4 OTHER EUKARYOTES - 222 (SOURCE NCBI BLINK) |
AT1G55750 | Predictedinteraction predictiontwo hybrid | FSW = 0.0172
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G29330 | Predictedinterologs mapping | FSW = 0.0222
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0779
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT3G05710 | Predictedinterologs mappingPhenotypic EnhancementCo-purification | FSW = 0.1422
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G67730 | PredictedPhenotypic Enhancement | FSW = 0.0303
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT5G66020 | PredictedColocalization | FSW = 0.0771
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT5G38460 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2514
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0103
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G74340 | Predictedin vivo | FSW = 0.0245
| Unknown | DOLICHOL PHOSPHATE-MANNOSE BIOSYNTHESIS REGULATORY PROTEIN-RELATED |
AT1G01910 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0637
| Unknown | ANION-TRANSPORTING ATPASE PUTATIVE |
AT1G02145 | PredictedPhenotypic Enhancement | FSW = 0.1943
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G16900 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2838
| Unknown | SUGAR BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT2G37550 | Predictedtwo hybrid | FSW = 0.0431
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G26450 | PredictedPhenotypic Enhancement | FSW = 0.1600
| Unknown | BETA-13-GLUCANASE-RELATED |
AT1G57620 | PredictedPhenotypic Enhancement | FSW = 0.0462
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.1833
| Unknown | CATALYTIC/ TRANSFERASE |
AT2G39770 | Predictedinterologs mapping | FSW = 0.0106
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT4G08500 | PredictedSynthetic Rescue | FSW = 0.0251
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT3G19420 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0111
| Unknown | ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE |
AT1G24470 | Predictedinterologs mapping | FSW = 0.0320
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G09460 | Predictedinterologs mapping | FSW = 0.1618
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G09580 | Predictedinterologs mapping | FSW = 0.0612
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G53710 | Predictedinteraction predictioninterologs mapping | FSW = 0.0417
| Unknown | AGD6 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G09000 | PredictedSynthetic Rescue | FSW = 0.0370
| Unknown | ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454