Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G20580 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )

55 Proteins interacs with AT1G20580
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G07590

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5054

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT4G02840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5896

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G20960

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5650

Class C:

nucleus

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G09760

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6084

Class C:

nucleus

U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT1G09770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3880

Class C:

nucleus

ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT2G19940

Predicted

Affinity Capture-MS

FSW = 0.0161

Class C:

nucleus

N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE/ NAD OR NADH BINDING / BINDING / CATALYTIC/ OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS NAD OR NADP AS ACCEPTOR / PROTEIN DIMERIZATION
AT5G64270

Predicted

Affinity Capture-MS

FSW = 0.4219

Class C:

nucleus

SPLICING FACTOR PUTATIVE
AT5G08290

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.6184

Class C:

nucleus

YLS8 CATALYTIC
AT2G47640

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5000

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT3G19840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2962

Class C:

nucleus

FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT3G50670

Predicted

Affinity Capture-MS

FSW = 0.1527

Class C:

nucleus

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G23930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.6731

Class C:

nucleus

SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT5G27720

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2736

Class C:

nucleus

EMB1644 (EMBRYO DEFECTIVE 1644)
AT3G11500

Predicted

interaction prediction

Co-expression

FSW = 0.5823

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN G PUTATIVE / SNRNP-G PUTATIVE / SM PROTEIN G PUTATIVE
AT1G28060

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4757

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT5G44200

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0923

Class C:

nucleus

CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT2G41500

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.4655

Class C:

nucleus

EMB2776 NUCLEOTIDE BINDING
AT1G05120

Predicted

two hybrid

interologs mapping

interaction prediction

FSW = 0.0057

Class C:

nucleus

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT3G62310

Predicted

Affinity Capture-MS

FSW = 0.0957

Class C:

nucleus

RNA HELICASE PUTATIVE
AT1G04510

Predicted

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.4461

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G43810

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1653

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G03330

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.3348

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT4G30330

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.5185

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT2G18740

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.5065

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G19120

Predicted

Affinity Capture-MS

FSW = 0.1175

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30220

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.6198

Class C:

nucleus

RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT2G03870

Predicted

Affinity Capture-MS

FSW = 0.1866

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870

Predicted

interaction prediction

Co-expression

FSW = 0.2364

Class C:

nucleus

SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT5G20160

Predicted

interaction prediction

Co-expression

FSW = 0.0120

Class C:

nucleus

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT1G80070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5779

Unknown

SUS2 (ABNORMAL SUSPENSOR 2)
AT2G33340

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.4141

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G55200Predicted

Affinity Capture-MS

FSW = 0.3826

Unknown

SPLICING FACTOR PUTATIVE
AT1G11680

Predicted

Synthetic Lethality

FSW = 0.0074

Unknown

CYP51G1 (CYTOCHROME P450 51G1) OXYGEN BINDING / STEROL 14-DEMETHYLASE
AT1G54080

Predicted

interaction prediction

FSW = 0.0174

Unknown

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT2G43460

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0075

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38A)
AT4G15900

Predicted

Affinity Capture-MS

FSW = 0.2045

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G16800

Predicted

interaction prediction

two hybrid

interologs mapping

FSW = 0.0125

Unknown

TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED
AT1G14640

Predicted

Affinity Capture-MS

FSW = 0.5258

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT1G17070

Predicted

Affinity Capture-MS

FSW = 0.3818

Unknown

D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G17130

Predicted

Affinity Capture-MS

FSW = 0.1245

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT1G60170

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.6045

Unknown

EMB1220 (EMBRYO DEFECTIVE 1220)
AT2G32600

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3307

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT3G03340

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3597

Unknown

UNE6 (UNFERTILIZED EMBRYO SAC 6)
AT3G05760

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.2575

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G14100

Predicted

Affinity Capture-MS

FSW = 0.0156

Unknown

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT4G03430

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3902

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G21660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5043

Unknown

PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT5G06160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5128

Unknown

ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G28740

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.2902

Unknown

TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT5G41770

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3664

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT5G46400

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4896

Unknown

PRP39-2
AT3G55220

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.6119

Unknown

SPLICING FACTOR PUTATIVE
AT1G44910

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1882

Unknown

PROTEIN BINDING
AT1G17370

Predicted

Affinity Capture-MS

FSW = 0.0106

Unknown

UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING
AT1G11650

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.1416

Unknown

RNA-BINDING PROTEIN 45 (RBP45) PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454