Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G20620 - ( CAT3 (CATALASE 3) catalase )
21 Proteins interacs with AT1G20620| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G09320
   | Experimentaltwo hybrid | FSW = 0.1341
| Class A:plastidplasma membraneperoxisomeClass B:vacuoleunclearnucleusmitochondrioncytosolClass D:plastid (p = 0.78)cytosol (p = 0.67) | NDPK1 ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE |
| AT5G35410
| Experimental | FSW = 0.0379
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
| AT1G20630
| PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2236
| Class C:plastidperoxisomemitochondrion | CAT1 (CATALASE 1) CATALASE |
| AT4G35090
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1001
| Class C:plastidperoxisomemitochondrion | CAT2 (CATALASE 2) CATALASE |
| AT5G53480
| Predictedtwo hybrid | FSW = 0.0173
| Class C:plastid | IMPORTIN BETA-2 PUTATIVE |
| AT5G62880
| PredictedSynthetic Rescuetwo hybridAffinity Capture-Westerntwo hybridAffinity Capture-WesternReconstituted Complextwo hybridAffinity Capture-Westerntwo hybridtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted ComplexAffinity Capture-WesternCo-purificationSynthetic RescueDosage Growth Defect | FSW = 0.0547
| Class C:plasma membrane | ARAC10 GTP BINDING |
| AT1G47250
| Predictedtwo hybrid | FSW = 0.0185
| Class C:plasma membrane | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT1G79930
| PredictedSynthetic Rescue | FSW = 0.0673
| Class C:plasma membrane | HSP91 ATP BINDING |
| AT1G77210
| Predictedsynthetic growth defect | FSW = 0.0829
| Class C:plasma membrane | SUGAR TRANSPORTER PUTATIVE |
| AT5G40650
| PredictedAffinity Capture-Western | FSW = 0.0417
| Class C:mitochondrion | SDH2-2 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
| AT5G01820
| PredictedSynthetic Lethality | FSW = 0.1195
| Unknown | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT3G07260
| PredictedAffinity Capture-WesternReconstituted Complexbiochemical | FSW = 0.0180
| Unknown | FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN |
| AT3G07140
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0308
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
| AT1G54560 | PredictedAffinity Capture-WesternSynthetic RescueAffinity Capture-WesternColocalizationReconstituted ComplexSynthetic RescuePhenotypic Suppression | FSW = 0.0824
| Unknown | XIE MOTOR/ PROTEIN BINDING |
| AT3G03340
| PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0483
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
| AT4G22140
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0316
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT5G04800
| PredictedAffinity Capture-Western | FSW = 0.0080
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
| AT5G13010
| PredictedSynthetic Rescue | FSW = 0.0222
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G35750
| PredictedSynthetic Rescue | FSW = 0.0128
| Unknown | AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
| AT5G45010
| Predictedinterologs mapping | FSW = 0.0554
| Unknown | ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) |
| AT1G02690
| Predictedtwo hybrid | FSW = 0.0120
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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