Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G20760 - ( calcium-binding EF hand family protein )
69 Proteins interacs with AT1G20760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedSynthetic Lethality | FSW = 0.0030
| Class C:plasma membrane | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT3G49910 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2211
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.4489
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.3226
| Class C:plasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G43160 | Predictedin vitro | FSW = 0.0074
| Class C:plasma membrane | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.4620
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.4137
| Class C:plasma membrane | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G61430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4808
| Class C:plasma membrane | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.2043
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT3G09740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3380
| Class C:plasma membrane | SYP71 (SYNTAXIN OF PLANTS 71) PROTEIN TRANSPORTER |
AT1G63290 | PredictedAffinity Capture-MS | FSW = 0.4444
| Class C:plasma membrane | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT1G08680 | Predictedtwo hybridin vivoin vitro | FSW = 0.0185
| Class C:plasma membrane | ZIGA4 (ARF GAP-LIKE ZINC FINGER-CONTAINING PROTEIN ZIGA4) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G66410 | PredictedAffinity Capture-MS | FSW = 0.0025
| Class C:plasma membrane | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT4G24400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3484
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G35310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5221
| Class C:plasma membrane | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5691
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.1661
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT5G24400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4402
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MS | FSW = 0.4538
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G21640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4361
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT5G13050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1709
| Unknown | 5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE) 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
AT1G80030 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1458
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G64190 | PredictedSynthetic Lethality | FSW = 0.0076
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2928
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.1315
| Unknown | HISTONE H2B PUTATIVE |
AT1G29880 | PredictedAffinity Capture-MS | FSW = 0.0274
| Unknown | GLYCYL-TRNA SYNTHETASE / GLYCINE--TRNA LIGASE |
AT1G34065 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2575
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4500
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT4G30990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2336
| Unknown | BINDING |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.1822
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.3542
| Unknown | PSF2 |
AT3G52580 | PredictedAffinity Capture-MS | FSW = 0.2167
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT1G05660 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3281
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4408
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3464
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G03590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3309
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G19940 | PredictedAffinity Capture-MS | FSW = 0.1252
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G23570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3958
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G52390 | PredictedAffinity Capture-MS | FSW = 0.2207
| Unknown | TATD-RELATED DEOXYRIBONUCLEASE FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0614
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G12440 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | ADENINE PHOSPHORIBOSYLTRANSFERASE PUTATIVE |
AT4G36800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybridAffinity Capture-MS | FSW = 0.5357
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT5G24840 | PredictedSynthetic Lethality | FSW = 0.0073
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4604
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G60340 | PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3356
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.2414
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G65660 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.5020
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2056
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G21250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1644
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G37540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4512
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G05960 | PredictedAffinity Capture-MS | FSW = 0.2335
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G11330 | PredictedAffinity Capture-MS | FSW = 0.2060
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT4G39330 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3505
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.4610
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16750 | PredictedAffinity Capture-MS | FSW = 0.3339
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2424
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.4699
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G54200 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5103
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT1G03530 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT3G05090 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G08670 | PredictedReconstituted Complextwo hybrid | FSW = 0.0411
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT1G32610 | PredictedSynthetic Lethality | FSW = 0.0455
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
AT1G07270 | PredictedSynthetic Lethality | FSW = 0.0035
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G03050 | Predictedtwo hybrid | FSW = 0.0493
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454