Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G20960 - ( emb1507 (embryo defective 1507) ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding )

77 Proteins interacs with AT1G20960
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G18165

Experimental

FSW = 0.1982

Class A:

unclear

nucleus

Class D:

cytosol (p = 0.67)

MOS4 (MODIFIER OF SNC14)
AT5G05410

Experimental

FSW = 0.0059

Class A:

nucleus

Class B:

unclear

Class D:

mitochondrion (p = 0.82)

DREB2A DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G06220

Experimental

FSW = 0.1707

Class B:

unclear

plasma membrane

nucleus

Class D:

cytosol (p = 0.67)

MEE5 (MATERNAL EFFECT EMBRYO ARREST 5) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT3G07590

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.3723

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT4G02840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.4491

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT1G09760

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4762

Class C:

nucleus

U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING
AT5G64270

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3675

Class C:

nucleus

SPLICING FACTOR PUTATIVE
AT1G09770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4643

Class C:

nucleus

ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR
AT2G04390

Predicted

Synthetic Lethality

FSW = 0.0150

Class C:

nucleus

40S RIBOSOMAL PROTEIN S17 (RPS17A)
AT5G08290

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4912

Class C:

nucleus

YLS8 CATALYTIC
AT5G67270

Predicted

Synthetic Lethality

FSW = 0.0248

Class C:

nucleus

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT2G43810

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1772

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT4G20440

Predicted

Affinity Capture-MS

FSW = 0.0190

Class C:

nucleus

SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B)
AT2G23930

Predicted

Co-purification

Co-purification

Affinity Capture-MS

FSW = 0.5031

Class C:

nucleus

SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G)
AT5G27720

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2402

Class C:

nucleus

EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G03330

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3306

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G76860

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

interaction prediction

FSW = 0.2707

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30330

Predicted

Co-purification

Co-purification

Affinity Capture-MS

FSW = 0.4307

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G21190

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.2127

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G18740

Predicted

Co-purification

Co-purification

FSW = 0.3951

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G16610

Predicted

Affinity Capture-MS

FSW = 0.0922

Class C:

nucleus

SR45 RNA BINDING / PROTEIN BINDING
AT3G50670

Predicted

two hybrid

two hybrid

Affinity Capture-Western

interologs mapping

interaction prediction

FSW = 0.1096

Class C:

nucleus

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G47640

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3951

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT1G20580

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5650

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G28060

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4137

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT1G21690

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0065

Class C:

nucleus

EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G19120

Predicted

Affinity Capture-MS

FSW = 0.1556

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1785

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30220

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.5361

Class C:

nucleus

RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT3G62310

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1116

Class C:

nucleus

RNA HELICASE PUTATIVE
AT1G04510

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Co-expression

FSW = 0.4429

Class C:

nucleus

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G22380

Predicted

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.0429

Class C:

nucleus

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT5G48870

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2157

Class C:

nucleus

SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT2G42270

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0753

Class C:

nucleus

U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE PUTATIVE
AT2G41500

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4372

Class C:

nucleus

EMB2776 NUCLEOTIDE BINDING
AT2G33340

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.3847

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G18790

Predicted

Affinity Capture-MS

FSW = 0.1911

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK)
AT1G80070

Predicted

two hybrid

Synthetic Rescue

Synthetic Lethality

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Protein-peptide

synthetic growth defect

interaction prediction

Co-expression

FSW = 0.7091

Unknown

SUS2 (ABNORMAL SUSPENSOR 2)
AT3G55200Predicted

Affinity Capture-MS

FSW = 0.2806

Unknown

SPLICING FACTOR PUTATIVE
AT2G47250

Predicted

Affinity Capture-MS

Enriched domain pair

Co-expression

FSW = 0.0874

Unknown

RNA HELICASE PUTATIVE
AT1G36160

Predicted

two hybrid

FSW = 0.0222

Unknown

ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE
AT3G47690

Predicted

Synthetic Lethality

FSW = 0.0253

Unknown

ATEB1A MICROTUBULE BINDING
AT4G15900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1940

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G02570

Predicted

in vitro

FSW = 0.1102

Unknown

NUCLEIC ACID BINDING
AT2G43770

Predicted

Affinity Capture-MS

FSW = 0.0931

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G16360

Predicted

Affinity Capture-MS

FSW = 0.0041

Unknown

AMP-ACTIVATED PROTEIN KINASE
AT1G03140

Predicted

Co-purification

FSW = 0.0803

Unknown

SPLICING FACTOR PRP18 FAMILY PROTEIN
AT1G05910

Predicted

two hybrid

FSW = 0.0235

Unknown

CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED
AT1G14640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4167

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN
AT1G17070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3792

Unknown

D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT1G10580

Predicted

Affinity Capture-MS

FSW = 0.1757

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G60170

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5226

Unknown

EMB1220 (EMBRYO DEFECTIVE 1220)
AT1G65660

Predicted

two hybrid

interaction prediction

FSW = 0.1524

Unknown

SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING
AT1G66510

Predicted

Affinity Capture-MS

FSW = 0.1684

Unknown

AAR2 PROTEIN FAMILY
AT1G80930

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.2688

Unknown

MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT3G03340

Predicted

Affinity Capture-MS

FSW = 0.2256

Unknown

UNE6 (UNFERTILIZED EMBRYO SAC 6)
AT3G05760

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2014

Unknown

NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0204

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G03430

Predicted

Co-purification

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

interaction prediction

FSW = 0.4055

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G21110

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2122

Unknown

G10 FAMILY PROTEIN
AT4G21660

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.4381

Unknown

PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN
AT5G06160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.4130

Unknown

ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G13010

Predicted

two hybrid

Affinity Capture-Western

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.0745

Unknown

EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT5G28740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.3300

Unknown

TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT5G41770

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3954

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT1G49760

Predicted

Affinity Capture-MS

FSW = 0.0931

Unknown

PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G52980

Predicted

two hybrid

interaction prediction

FSW = 0.0306

Unknown

GTP-BINDING FAMILY PROTEIN
AT3G55220

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5109

Unknown

SPLICING FACTOR PUTATIVE
AT4G33240

Predicted

two hybrid

FSW = 0.0135

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G46400

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3797

Unknown

PRP39-2
AT4G12600

Predicted

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.0415

Unknown

RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN
AT3G16650

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2288

Unknown

PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2)
AT3G13210

Predicted

Affinity Capture-MS

FSW = 0.1502

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT1G22760

Predicted

Affinity Capture-MS

FSW = 0.1107

Unknown

PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR
AT1G71010

Predicted

two hybrid

FSW = 0.0300

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT5G42950

Predicted

two hybrid

Co-expression

FSW = 0.0143

Unknown

GYF DOMAIN-CONTAINING PROTEIN
AT5G61140

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0342

Unknown

DEAD BOX RNA HELICASE PUTATIVE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454