Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G20960 - ( emb1507 (embryo defective 1507) ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding )
77 Proteins interacs with AT1G20960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G18165 | Experimental | FSW = 0.1982
| Class A:unclearnucleusClass D:cytosol (p = 0.67) | MOS4 (MODIFIER OF SNC14) |
AT5G05410 | Experimental | FSW = 0.0059
| Class A:nucleusClass B:unclearClass D:mitochondrion (p = 0.82) | DREB2A DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G06220 | Experimental | FSW = 0.1707
| Class B:unclearplasma membranenucleusClass D:cytosol (p = 0.67) | MEE5 (MATERNAL EFFECT EMBRYO ARREST 5) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G07590 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.3723
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT4G02840 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.4491
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT1G09760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4762
| Class C:nucleus | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT5G64270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3675
| Class C:nucleus | SPLICING FACTOR PUTATIVE |
AT1G09770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4643
| Class C:nucleus | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G04390 | PredictedSynthetic Lethality | FSW = 0.0150
| Class C:nucleus | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT5G08290 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4912
| Class C:nucleus | YLS8 CATALYTIC |
AT5G67270 | PredictedSynthetic Lethality | FSW = 0.0248
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G43810 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1772
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT4G20440 | PredictedAffinity Capture-MS | FSW = 0.0190
| Class C:nucleus | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
AT2G23930 | PredictedCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.5031
| Class C:nucleus | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
AT5G27720 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2402
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G03330 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3306
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT1G76860 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.2707
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G30330 | PredictedCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.4307
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT1G21190 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2127
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G18740 | PredictedCo-purificationCo-purification | FSW = 0.3951
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT1G16610 | PredictedAffinity Capture-MS | FSW = 0.0922
| Class C:nucleus | SR45 RNA BINDING / PROTEIN BINDING |
AT3G50670 | Predictedtwo hybridtwo hybridAffinity Capture-Westerninterologs mappinginteraction prediction | FSW = 0.1096
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G47640 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3951
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT1G20580 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5650
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT1G28060 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4137
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT1G21690 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0065
| Class C:nucleus | EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G19120 | PredictedAffinity Capture-MS | FSW = 0.1556
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1785
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G30220 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5361
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT3G62310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1116
| Class C:nucleus | RNA HELICASE PUTATIVE |
AT1G04510 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-expression | FSW = 0.4429
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G22380 | PredictedCo-purificationAffinity Capture-MSCo-purification | FSW = 0.0429
| Class C:nucleus | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT5G48870 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2157
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT2G42270 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0753
| Class C:nucleus | U5 SMALL NUCLEAR RIBONUCLEOPROTEIN HELICASE PUTATIVE |
AT2G41500 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4372
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
AT2G33340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3847
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G18790 | PredictedAffinity Capture-MS | FSW = 0.1911
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT1G80070 | Predictedtwo hybridSynthetic RescueSynthetic LethalityCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSProtein-peptidesynthetic growth defectinteraction predictionCo-expression | FSW = 0.7091
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G55200 | PredictedAffinity Capture-MS | FSW = 0.2806
| Unknown | SPLICING FACTOR PUTATIVE |
AT2G47250 | PredictedAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0874
| Unknown | RNA HELICASE PUTATIVE |
AT1G36160 | Predictedtwo hybrid | FSW = 0.0222
| Unknown | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1) ACETYL-COA CARBOXYLASE |
AT3G47690 | PredictedSynthetic Lethality | FSW = 0.0253
| Unknown | ATEB1A MICROTUBULE BINDING |
AT4G15900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1940
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G02570 | Predictedin vitro | FSW = 0.1102
| Unknown | NUCLEIC ACID BINDING |
AT2G43770 | PredictedAffinity Capture-MS | FSW = 0.0931
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G16360 | PredictedAffinity Capture-MS | FSW = 0.0041
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT1G03140 | PredictedCo-purification | FSW = 0.0803
| Unknown | SPLICING FACTOR PRP18 FAMILY PROTEIN |
AT1G05910 | Predictedtwo hybrid | FSW = 0.0235
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G14640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4167
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
AT1G17070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3792
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
AT1G10580 | PredictedAffinity Capture-MS | FSW = 0.1757
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G60170 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5226
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT1G65660 | Predictedtwo hybridinteraction prediction | FSW = 0.1524
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
AT1G66510 | PredictedAffinity Capture-MS | FSW = 0.1684
| Unknown | AAR2 PROTEIN FAMILY |
AT1G80930 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2688
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT3G03340 | PredictedAffinity Capture-MS | FSW = 0.2256
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT3G05760 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2014
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G03430 | PredictedCo-purificationCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.4055
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT4G21110 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2122
| Unknown | G10 FAMILY PROTEIN |
AT4G21660 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4381
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
AT5G06160 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4130
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G13010 | Predictedtwo hybridAffinity Capture-Westerninteraction predictionEnriched domain pairCo-expression | FSW = 0.0745
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G28740 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.3300
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT5G41770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3954
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G49760 | PredictedAffinity Capture-MS | FSW = 0.0931
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G52980 | Predictedtwo hybridinteraction prediction | FSW = 0.0306
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT3G55220 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5109
| Unknown | SPLICING FACTOR PUTATIVE |
AT4G33240 | Predictedtwo hybrid | FSW = 0.0135
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT5G46400 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3797
| Unknown | PRP39-2 |
AT4G12600 | PredictedCo-purificationAffinity Capture-MSCo-purification | FSW = 0.0415
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT3G16650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2288
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
AT3G13210 | PredictedAffinity Capture-MS | FSW = 0.1502
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT1G22760 | PredictedAffinity Capture-MS | FSW = 0.1107
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G71010 | Predictedtwo hybrid | FSW = 0.0300
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT5G42950 | Predictedtwo hybridCo-expression | FSW = 0.0143
| Unknown | GYF DOMAIN-CONTAINING PROTEIN |
AT5G61140 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0342
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454