Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G21720 - ( PBC1 (PROTEASOME BETA SUBUNIT C1) peptidase/ threonine-type endopeptidase )
39 Proteins interacs with AT1G21720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G51260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4163
| Class C:vacuole | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G56070 | Predictedtwo hybridtwo hybridGene neighbors methodCo-expression | FSW = 0.0205
| Class C:vacuole | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G22630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSGene fusion methodCo-expression | FSW = 0.2399
| Class C:vacuole | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | PredictedAffinity Capture-MS | FSW = 0.5478
| Class C:vacuole | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4449
| Class C:vacuole | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2083
| Class C:vacuole | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedCo-crystal StructureAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.4678
| Class C:vacuole | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G26590 | PredictedSynthetic Lethality | FSW = 0.0052
| Class C:vacuole | MATE EFFLUX FAMILY PROTEIN |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1508
| Class C:vacuole | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4220
| Class C:vacuole | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G01410 | PredictedSynthetic RescueSynthetic RescueSynthetic RescuePhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0427
| Unknown | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT3G60820 | PredictedAffinity Capture-MSPhylogenetic profile method | FSW = 0.4478
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G31810 | Predictedinteraction predictiontwo hybridtwo hybrid | FSW = 0.0661
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT3G16630 | Predictedtwo hybridtwo hybrid | FSW = 0.0504
| Unknown | KINESIN-13A ATP BINDING / MICROTUBULE MOTOR |
AT2G36880 | PredictedSynthetic Lethality | FSW = 0.0404
| Unknown | MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2557
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.1962
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G42790 | PredictedAffinity Capture-MS | FSW = 0.3496
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G29330 | Predictedinterologs mapping | FSW = 0.0186
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT4G33720 | PredictedPhenotypic Enhancement | FSW = 0.0078
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G38960 | Predictedbiochemical | FSW = 0.0167
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT1G77440 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3515
| Unknown | PBC2 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitroin vivoGene neighbors methodCo-expression | FSW = 0.4316
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G77990 | PredictedAffinity Capture-MS | FSW = 0.0150
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT1G13060 | Predictedtwo hybridCo-purificationCo-crystal StructureAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4398
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3263
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G25050 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN / FH2 DOMAIN-CONTAINING PROTEIN |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivoin vitroAffinity Capture-MSinteraction predictionGene neighbors methodCo-expression | FSW = 0.2835
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT1G55810 | Predictedinterologs mapping | FSW = 0.0423
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G56450 | PredictedCo-crystal StructureAffinity Capture-MSAffinity Capture-MS | FSW = 0.5036
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G20410 | Predictedtwo hybrid | FSW = 0.0121
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | XIF MOTOR |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0751
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G40580 | Predictedinteraction predictionAffinity Capture-MStwo hybridCo-crystal Structuresynthetic growth defectAffinity Capture-MS | FSW = 0.5196
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G51940 | PredictedSynthetic Rescue | FSW = 0.0178
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G13330 | PredictedAffinity Capture-MS | FSW = 0.2503
| Unknown | BINDING |
AT3G27430 | Predictedtwo hybridtwo hybridAffinity Capture-MSCo-crystal Structuresynthetic growth defecttwo hybridCo-expression | FSW = 0.4675
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G04630 | PredictedSynthetic Rescue | FSW = 0.0262
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G06140 | Predictedtwo hybrid | FSW = 0.0136
| Unknown | SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454