Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT1G21900 - ( emp24/gp25L/p24 family protein )

14 Proteins interacs with AT1G21900
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G14010

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.1712

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G62870

Predicted

Affinity Capture-MS

FSW = 0.0149

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G74710

Predicted

synthetic growth defect

FSW = 0.0623

Unknown

ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE
AT1G69460

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.5858

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G15440

Predicted

two hybrid

FSW = 0.0230

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G25155Predicted

synthetic growth defect

FSW = 0.0582

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G26320

Predicted

Synthetic Lethality

FSW = 0.0093

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT3G24010

Predicted

interologs mapping

interologs mapping

FSW = 0.0675

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT5G16170

Predicted

synthetic growth defect

FSW = 0.0299

Unknown

UNKNOWN PROTEIN
AT3G29070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4091

Unknown

PROTEIN TRANSMEMBRANE TRANSPORTER
AT1G57620

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2955

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G26690

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1702

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G10780

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5870

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G09580

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.2420

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454