Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22170 - ( phosphoglycerate/bisphosphoglycerate mutase family protein )
36 Proteins interacs with AT1G22170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G13440 | PredictedAffinity Capture-MS | FSW = 0.1116
| Class C:plastid | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G36880 | PredictedAffinity Capture-MS | FSW = 0.0237
| Class C:plastid | ACETYL-COA SYNTHETASE PUTATIVE / ACETATE-COA LIGASE PUTATIVE |
AT2G04842 | Predictedpull down | FSW = 0.0147
| Class C:plastid | EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE |
AT1G80070 | Predictedtwo hybridinteraction prediction | FSW = 0.0349
| Class C:plastid | SUS2 (ABNORMAL SUSPENSOR 2) |
AT3G11630 | PredictedAffinity Capture-MS | FSW = 0.0086
| Class C:plastid | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT2G33450 | Predictedpull down | FSW = 0.0124
| Class C:plastid | 50S RIBOSOMAL PROTEIN L28 CHLOROPLAST (CL28) |
AT2G33340 | PredictedCo-purification | FSW = 0.0189
| Class C:plastid | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G49360 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0529
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE FAMILY PROTEIN |
AT5G10350 | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.0813
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.1096
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT2G20580 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G18270 | PredictedAffinity Capture-MS | FSW = 0.0976
| Unknown | KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN |
AT1G04510 | PredictedCo-purification | FSW = 0.0332
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G60980 | Predictedco-fractionationCo-fractionationsynthetic growth defectAffinity Capture-MS | FSW = 0.0889
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G60360 | Predictedsynthetic growth defect | FSW = 0.1610
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G15140 | Predictedpull down | FSW = 0.0229
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT1G10580 | PredictedPhenotypic Suppression | FSW = 0.1053
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G13580 | Predictedsynthetic growth defect | FSW = 0.0692
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G70290 | Predictedbiochemical | FSW = 0.0132
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT4G14710 | PredictedPhenotypic Enhancement | FSW = 0.1340
| Unknown | ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT4G16265 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G16710 | PredictedAffinity Capture-MS | FSW = 0.0391
| Unknown | GLYCOSYLTRANSFERASE FAMILY PROTEIN 28 |
AT4G38630 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G14180 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.1858
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G40280 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Unknown | ERA1 (ENHANCED RESPONSE TO ABA 1) FARNESYLTRANSTRANSFERASE/ PROTEIN FARNESYLTRANSFERASE |
AT5G42190 | PredictedAffinity Capture-MS | FSW = 0.0022
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G54940 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0769
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0598
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G33560 | Predictedsynthetic growth defect | FSW = 0.0537
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT3G12200 | Predictedinterologs mapping | FSW = 0.0382
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G13210 | PredictedSynthetic Lethality | FSW = 0.1547
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G24010 | PredictedSynthetic RescueSynthetic RescueSynthetic Rescue | FSW = 0.0428
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G53030 | PredictedSynthetic Rescue | FSW = 0.0158
| Unknown | SRPK4 (SER/ARG-RICH PROTEIN KINASE 4) KINASE/ PROTEIN KINASE |
AT5G06600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0749
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G27970 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454