Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22450 - ( COX6B (CYTOCHROME C OXIDASE 6B) cytochrome-c oxidase )
10 Proteins interacs with AT1G22450| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G35750
   | Experimentaltwo hybrid | FSW = 0.0485
| Unknown | AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
| AT3G14930
| Predictedtwo hybrid | FSW = 0.1569
| Class C:plastid | HEME1 UROPORPHYRINOGEN DECARBOXYLASE |
| AT2G40490
| Predictedtwo hybrid | FSW = 0.1381
| Class C:plastid | HEME2 UROPORPHYRINOGEN DECARBOXYLASE |
| AT1G22840
| Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0395
| Unknown | CYTC-1 (CYTOCHROME C-1) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
| AT5G42740
| Predictedtwo hybridtwo hybrid | FSW = 0.0684
| Unknown | GLUCOSE-6-PHOSPHATE ISOMERASE CYTOSOLIC (PGIC) |
| AT5G52640
| Predictedtwo hybridtwo hybrid | FSW = 0.0036
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT2G20580
| Predictedtwo hybridtwo hybrid | FSW = 0.0548
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
| AT5G35530
| Predictedtwo hybridtwo hybrid | FSW = 0.0262
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
| AT1G07270
| Predictedtwo hybridtwo hybrid | FSW = 0.0169
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
| AT1G29150
| Predictedtwo hybridtwo hybrid | FSW = 0.0262
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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