Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22550 - ( proton-dependent oligopeptide transport (POT) family protein )

17 Proteins interacs with AT1G22550
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0565

Unknown

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT3G62870

Predicted

two hybrid

FSW = 0.0132

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G20550

Predicted

co-fractionation

Co-fractionation

FSW = 0.0530

Unknown

DDL (DAWDLE)
AT4G19690

Predicted

co-fractionation

Co-fractionation

FSW = 0.1154

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT1G77950

Predicted

interologs mapping

FSW = 0.1610

Unknown

AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR
AT2G36170Predicted

Co-purification

FSW = 0.0294

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT5G02730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0473

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G51300

Predicted

Affinity Capture-MS

FSW = 0.0485

Unknown

ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING
AT5G10330Predicted

interologs mapping

FSW = 0.0713

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT1G26140

Predicted

Affinity Capture-MS

FSW = 0.0833

Unknown

UNKNOWN PROTEIN
AT1G60680

Predicted

interologs mapping

FSW = 0.0792

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G03410

Predicted

Affinity Capture-MS

FSW = 0.0163

Unknown

MO25 FAMILY PROTEIN
AT2G19540

Predicted

Affinity Capture-MS

FSW = 0.0276

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0247

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT3G44590

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0909

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D)
AT4G18593

Predicted

Affinity Capture-MS

FSW = 0.0857

Unknown

DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED
AT4G25150

Predicted

Affinity Capture-MS

FSW = 0.0267

Unknown

ACID PHOSPHATASE PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454