Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22550 - ( proton-dependent oligopeptide transport (POT) family protein )
17 Proteins interacs with AT1G22550Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G15090 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0565
| Unknown | VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0132
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G20550 | Predictedco-fractionationCo-fractionation | FSW = 0.0530
| Unknown | DDL (DAWDLE) |
AT4G19690 | Predictedco-fractionationCo-fractionation | FSW = 0.1154
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT1G77950 | Predictedinterologs mapping | FSW = 0.1610
| Unknown | AGL67 (AGAMOUS-LIKE 67) TRANSCRIPTION FACTOR |
AT2G36170 | PredictedCo-purification | FSW = 0.0294
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT5G02730 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0473
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G51300 | PredictedAffinity Capture-MS | FSW = 0.0485
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
AT5G10330 | Predictedinterologs mapping | FSW = 0.0713
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G26140 | PredictedAffinity Capture-MS | FSW = 0.0833
| Unknown | UNKNOWN PROTEIN |
AT1G60680 | Predictedinterologs mapping | FSW = 0.0792
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.0163
| Unknown | MO25 FAMILY PROTEIN |
AT2G19540 | PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G44590 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0909
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT4G18593 | PredictedAffinity Capture-MS | FSW = 0.0857
| Unknown | DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED |
AT4G25150 | PredictedAffinity Capture-MS | FSW = 0.0267
| Unknown | ACID PHOSPHATASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454