Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22740 - ( RABG3B GTP binding )
38 Proteins interacs with AT1G22740| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G17530
   | PredictedPhylogenetic profile method | FSW = 0.3003
| Class C:vacuole | ATRAB1C GTP BINDING |
| AT4G19640
| PredictedPhylogenetic profile method | FSW = 0.3023
| Class C:vacuole | ARA7 GTP BINDING |
| AT1G02130
| PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2441
| Class C:vacuole | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
| AT1G52280
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5928
| Class C:vacuole | ATRABG3D (ARABIDOPSIS RAB GTPASE HOMOLOG G3D) GTP BINDING |
| AT1G49300
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4194
| Class C:vacuole | RABG3E (RAB GTPASE HOMOLOG G3E) GTP BINDING |
| AT3G56190
| Predictedco-fractionationCo-fractionation | FSW = 0.0131
| Class C:vacuole | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT2G44610
| PredictedPhylogenetic profile method | FSW = 0.1449
| Class C:vacuole | RAB6A GTP BINDING / PROTEIN BINDING |
| AT3G46060
| PredictedPhylogenetic profile method | FSW = 0.4048
| Class C:vacuole | ATRAB8A GTP BINDING |
| AT5G45130
| PredictedPhylogenetic profile method | FSW = 0.2145
| Class C:vacuole | RHA1 (RAB HOMOLOG 1) GTP BINDING |
| AT4G09720
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4293
| Class C:vacuole | RAS-RELATED GTP-BINDING PROTEIN PUTATIVE |
| AT2G38020
| PredictedAffinity Capture-Western | FSW = 0.1878
| Class C:vacuole | VCL1 (VACUOLELESS 1) |
| AT2G30710
| Predictedbiochemicalinterologs mapping | FSW = 0.1047
| Class C:vacuole | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
| AT2G21880
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3611
| Class C:vacuole | ATRAB7A GTP BINDING |
| AT1G27770
| Predictedinterologs mapping | FSW = 0.0551
| Unknown | ACA1 (AUTO-INHIBITED CA2+-ATPASE 1) CALCIUM CHANNEL/ CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING |
| AT3G16100
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.5472
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
| AT3G18820
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.3714
| Unknown | ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING |
| AT3G53610
| PredictedPhylogenetic profile method | FSW = 0.3445
| Unknown | ATRAB8 GTP BINDING |
| AT3G09900
| PredictedPhylogenetic profile method | FSW = 0.3518
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
| AT5G59840
| PredictedPhylogenetic profile method | FSW = 0.4149
| Unknown | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
| AT5G47200
| PredictedPhylogenetic profile method | FSW = 0.2738
| Unknown | ATRAB1A GTP BINDING |
| AT1G43890
| PredictedPhylogenetic profile method | FSW = 0.3052
| Unknown | ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18) GTP BINDING |
| AT2G22290
| PredictedSynthetic Lethality | FSW = 0.2751
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
| AT5G03520
| PredictedPhylogenetic profile method | FSW = 0.4667
| Unknown | ATRAB8C GTP BINDING |
| AT1G10130
| Predictedinterologs mapping | FSW = 0.0333
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
| AT1G69700
| PredictedAffinity Capture-Western | FSW = 0.1391
| Unknown | ATHVA22C |
| AT2G05170
| PredictedAffinity Capture-Western | FSW = 0.0643
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
| AT3G54860
| PredictedAffinity Capture-WesternColocalization | FSW = 0.1121
| Unknown | VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE |
| AT2G44100
| PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridEnriched domain pairCo-expression | FSW = 0.1513
| Unknown | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR |
| AT1G12470
| PredictedAffinity Capture-Western | FSW = 0.1406
| Unknown | PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN |
| AT2G28390
| Predictedinterologs mapping | FSW = 0.2041
| Unknown | SAND FAMILY PROTEIN |
| AT2G04620 | Predictedinterologs mapping | FSW = 0.0806
| Unknown | CATION EFFLUX FAMILY PROTEIN |
| AT2G18840
| PredictedReconstituted Complex | FSW = 0.2029
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
| AT1G30890
| PredictedReconstituted Complextwo hybrid | FSW = 0.3556
| Unknown | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
| AT1G16225
| Predictedtwo hybrid | FSW = 0.1136
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN CONTAINS INTERPRO DOMAIN/S TARGET SNARE COILED-COIL REGION (INTERPROIPR000727) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SYNTAXIN-RELATED FAMILY PROTEIN (TAIRAT1G162301) HAS 85 BLAST HITS TO 85 PROTEINS IN 27 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 22 PLANTS - 56 VIRUSES - 0 OTHER EUKARYOTES - 7 (SOURCE NCBI BLINK) |
| AT2G36300
| Predictedtwo hybrid | FSW = 0.1822
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
| AT5G39620
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.6224
| Unknown | ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING |
| AT3G09910
| PredictedPhylogenetic profile method | FSW = 0.3879
| Unknown | ATRABC2B (ARABIDOPSIS RAB GTPASE HOMOLOG C2B) ATP BINDING / GTP BINDING / TRANSCRIPTION FACTOR BINDING |
| AT5G03530
| PredictedPhylogenetic profile method | FSW = 0.2732
| Unknown | RABC2A (RAB GTPASE HOMOLOG C2A) GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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