Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22920 - ( CSN5A (COP9 SIGNALOSOME 5A) )

22 Proteins interacs with AT1G22920
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G30950

Experimental

FSW = 0.1980

Class D:

nucleus (p = 0.78)

UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G56280

Experimental

two hybrid

FSW = 0.3754

Class D:

nucleus (p = 0.78)

CSN6A
AT4G26430

Experimental

FSW = 0.3247

Class D:

nucleus (p = 0.78)

CSN6B
AT1G71230

Experimental

FSW = 0.4268

Class D:

nucleus (p = 0.78)

CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING
AT3G61140

Experimental

two hybrid

molecular sieving

two hybrid

Affinity Capture-Western

FSW = 0.3164

Class D:

nucleus (p = 0.78)

FUS6 (FUSCA 6)
AT5G14250

Experimental

FSW = 0.3068

Class D:

nucleus (p = 0.78)

COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING
AT3G13550

Experimental

Affinity Capture-Western

FSW = 0.1013

Unknown

FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G42970

Experimental

two hybrid

FSW = 0.2966

Unknown

COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING
AT4G14110

Experimental

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.4662

Unknown

COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) METALLOENDOPEPTIDASE/ PROTEIN BINDING
AT2G26990

Experimental

co-fractionation

Co-fractionation

Affinity Capture-Western

FSW = 0.2159

Unknown

FUS12 (FUSCA 12)
AT1G10840

Experimental

Affinity Capture-Western

FSW = 0.1701

Unknown

TIF3H1 TRANSLATION INITIATION FACTOR
AT1G10200

Predicted

two hybrid

FSW = 0.1600

Unknown

WLIM1 TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT1G20140

Predicted

Affinity Capture-MS

FSW = 0.0100

Unknown

ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G68380

Predicted

Phenotypic Enhancement

FSW = 0.0395

Unknown

UNKNOWN PROTEIN
AT5G09900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.0094

Unknown

EMB2107 (EMBRYO DEFECTIVE 2107)
AT3G12760

Predicted

Phenotypic Enhancement

FSW = 0.0267

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK)
AT5G26040

Predicted

two hybrid

FSW = 0.0704

Unknown

HDA2 HISTONE DEACETYLASE
AT5G10810

Predicted

two hybrid

Co-expression

FSW = 0.0729

Unknown

ATER
AT3G05870

Predicted

two hybrid

FSW = 0.0267

Unknown

APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G11800

Predicted

two hybrid

FSW = 0.0659

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT2G19560

Predicted

two hybrid

two hybrid

FSW = 0.0291

Unknown

EER5 (ENHANCED ETHYLENE RESPONSE 5)
AT5G15770

Predicted

interaction prediction

FSW = 0.0178

Unknown

ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454