Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G22920 - ( CSN5A (COP9 SIGNALOSOME 5A) )
22 Proteins interacs with AT1G22920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G30950 | Experimental | FSW = 0.1980
| Class D:nucleus (p = 0.78) | UFO (UNUSUAL FLORAL ORGANS) TRANSCRIPTION FACTOR BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G56280 | Experimentaltwo hybrid | FSW = 0.3754
| Class D:nucleus (p = 0.78) | CSN6A |
AT4G26430 | Experimental | FSW = 0.3247
| Class D:nucleus (p = 0.78) | CSN6B |
AT1G71230 | Experimental | FSW = 0.4268
| Class D:nucleus (p = 0.78) | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT3G61140 | Experimentaltwo hybridmolecular sievingtwo hybridAffinity Capture-Western | FSW = 0.3164
| Class D:nucleus (p = 0.78) | FUS6 (FUSCA 6) |
AT5G14250 | Experimental | FSW = 0.3068
| Class D:nucleus (p = 0.78) | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING |
AT3G13550 | ExperimentalAffinity Capture-Western | FSW = 0.1013
| Unknown | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42970 | Experimentaltwo hybrid | FSW = 0.2966
| Unknown | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT4G14110 | ExperimentalAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.4662
| Unknown | COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) METALLOENDOPEPTIDASE/ PROTEIN BINDING |
AT2G26990 | Experimentalco-fractionationCo-fractionationAffinity Capture-Western | FSW = 0.2159
| Unknown | FUS12 (FUSCA 12) |
AT1G10840 | ExperimentalAffinity Capture-Western | FSW = 0.1701
| Unknown | TIF3H1 TRANSLATION INITIATION FACTOR |
AT1G10200 | Predictedtwo hybrid | FSW = 0.1600
| Unknown | WLIM1 TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G20140 | PredictedAffinity Capture-MS | FSW = 0.0100
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G68380 | PredictedPhenotypic Enhancement | FSW = 0.0395
| Unknown | UNKNOWN PROTEIN |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0094
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT3G12760 | PredictedPhenotypic Enhancement | FSW = 0.0267
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S DEFECTIVE IN CULLIN NEDDYLATION (INTERPROIPR014764) UBIQUITIN-ASSOCIATED/TRANSLATION ELONGATION FACTOR EF1B N-TERMINAL (INTERPROIPR000449) PROTEIN OF UNKNOWN FUNCTION DUF298 (INTERPROIPR005176) UBA-LIKE (INTERPROIPR009060) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G158602) HAS 628 BLAST HITS TO 626 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 408 FUNGI - 99 PLANTS - 64 VIRUSES - 0 OTHER EUKARYOTES - 57 (SOURCE NCBI BLINK) |
AT5G26040 | Predictedtwo hybrid | FSW = 0.0704
| Unknown | HDA2 HISTONE DEACETYLASE |
AT5G10810 | Predictedtwo hybridCo-expression | FSW = 0.0729
| Unknown | ATER |
AT3G05870 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G11800 | Predictedtwo hybrid | FSW = 0.0659
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT2G19560 | Predictedtwo hybridtwo hybrid | FSW = 0.0291
| Unknown | EER5 (ENHANCED ETHYLENE RESPONSE 5) |
AT5G15770 | Predictedinteraction prediction | FSW = 0.0178
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454