Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G23310 - ( GGT1 (GLUTAMATEGLYOXYLATE AMINOTRANSFERASE) L-alanine2-oxoglutarate aminotransferase/ glycine2-oxoglutarate aminotransferase )
27 Proteins interacs with AT1G23310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09660 | PredictedAffinity Capture-MS | FSW = 0.0046
| Class C:plastidperoxisome | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT2G17360 | PredictedAffinity Capture-MS | FSW = 0.0032
| Class C:plastid | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT1G17290 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1048
| Class C:plastid | ALAAT1 (ALANINE AMINOTRANSFERAS) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT1G26880 | PredictedReconstituted Complex | FSW = 0.0645
| Class C:plastid | 60S RIBOSOMAL PROTEIN L34 (RPL34A) |
AT3G63490 | PredictedAffinity Capture-MS | FSW = 0.0076
| Class C:plastid | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT2G39290 | PredictedAffinity Capture-MS | FSW = 0.0129
| Class C:plastid | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT1G70580 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0800
| Class C:peroxisome | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G26590 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0095
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G47370 | PredictedAffinity Capture-MS | FSW = 0.0140
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT4G02050 | PredictedAffinity Capture-MS | FSW = 0.1086
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0389
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.0051
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT3G55605 | PredictedAffinity Capture-MS | FSW = 0.0232
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT1G72330 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0866
| Unknown | ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G66590 | PredictedAffinity Capture-MS | FSW = 0.0465
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G17810 | PredictedAffinity Capture-MS | FSW = 0.0290
| Unknown | BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) WATER CHANNEL |
AT1G16230 | PredictedReconstituted Complex | FSW = 0.2331
| Unknown | SYNTAXIN-RELATED FAMILY PROTEIN |
AT4G04695 | PredictedAffinity Capture-MS | FSW = 0.0185
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G01390 | PredictedPhenotypic Suppression | FSW = 0.0561
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G38890 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G45990 | PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT5G46150 | Predictedtwo hybrid | FSW = 0.0105
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G77360 | PredictedGene fusion method | FSW = 0.2000
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G77340 | PredictedGene fusion method | FSW = 0.0893
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT4G03110 | PredictedGene fusion method | FSW = 0.0893
| Unknown | RNA-BINDING PROTEIN PUTATIVE |
AT5G13840 | PredictedGene fusion method | FSW = 0.0758
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454