Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G23490 - ( ATARF1 (ADP-RIBOSYLATION FACTOR 1) GTP binding / phospholipase activator/ protein binding )

18 Proteins interacs with AT1G23490
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G01190

Experimental

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Affinity Capture-MS

FSW = 0.0381

Unknown

ATPIPK10 (ARABIDOPSIS PHOSPHATIDYLINOSITOL PHOSPHATE KINASE 10) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
AT3G61570

Experimental

pull down

FSW = 0.0356

Unknown

GDAP1 (GRIP-RELATED ARF-BINDING DOMAIN-CONTAINING ARABIDOPSIS PROTEIN 1) PROTEIN BINDING
AT3G62290

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5536

Unknown

ATARFA1E (ADP-RIBOSYLATION FACTOR A1E) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT1G10630

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6553

Unknown

ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT5G67560

Predicted

Phylogenetic profile method

FSW = 0.8605

Unknown

ATARLA1D (ADP-RIBOSYLATION FACTOR-LIKE A1D) GTP BINDING
AT2G47170

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.9444

Unknown

ARF1A1C GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT2G24765

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8028

Unknown

ARF3 (ADP-RIBOSYLATION FACTOR 3) PROTEIN BINDING
AT1G70490Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4523

Unknown

ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT5G52210

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2842

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G14670

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5536

Unknown

ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING
AT3G22950

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8450

Unknown

ATARFC1 (ADP-RIBOSYLATION FACTOR C1) GTP BINDING
AT3G03120

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9444

Unknown

ATARFB1C (ADP-RIBOSYLATION FACTOR B1C) GTP BINDING
AT5G17060

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9444

Unknown

ATARFB1B GTP BINDING
AT2G15310

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9143

Unknown

ATARFB1A (ADP-RIBOSYLATION FACTOR B1A) GTP BINDING
AT1G02440Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.9444

Unknown

ATARFD1A (ADP-RIBOSYLATION FACTOR D1A) GTP BINDING
AT1G02430

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.8605

Unknown

ATARFD1B (ADP-RIBOSYLATION FACTOR D1B) GTP BINDING
AT3G49860

Predicted

Phylogenetic profile method

FSW = 0.8605

Unknown

ATARLA1B (ADP-RIBOSYLATION FACTOR-LIKE A1B) GTP BINDING
AT5G37680

Predicted

Phylogenetic profile method

FSW = 0.8920

Unknown

ATARLA1A (ADP-RIBOSYLATION FACTOR-LIKE A1A) GTP BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454