Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G23860 - ( RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) protein binding )

10 Proteins interacs with AT1G23860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G50670

Experimental

far western blotting

two hybrid

Reconstituted Complex

FSW = 0.0285

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G18810

Experimental

Reconstituted Complex

in vitro

FSW = 0.6306

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL28 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G55460

Experimental

Reconstituted Complex

in vitro

FSW = 0.6124

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G13570

Experimental

Reconstituted Complex

in vitro

FSW = 0.6306

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SCL30A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G02840

Experimental

Reconstituted Complex

in vitro

FSW = 0.4205

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G37340

Experimental

two hybrid

Reconstituted Complex

FSW = 0.6750

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 RSZ33 NUCLEIC ACID BINDING / ZINC ION BINDING
AT2G43370

Experimental

Reconstituted Complex

FSW = 0.5182

Class A:

nucleus

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

 U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE
AT3G61860

Experimental

Reconstituted Complex

FSW = 0.4605

Class A:

nucleus

Class D:

nucleus (p = 0.78)

 RSP31 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G24740

Experimental

interaction detection method

FSW = 0.0683

Unknown

 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2) KINASE/ PROTEIN KINASE
AT1G53720

Experimental

Reconstituted Complex

in vitro

FSW = 0.3642

Unknown

 CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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