Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G23900 - ( GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1) binding / clathrin binding / protein binding / protein transporter )
16 Proteins interacs with AT1G23900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G11710 | Experimentalpull downReconstituted Complexcoimmunoprecipitation | FSW = 0.2066
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT1G10290 | Experimentaltwo hybrid | FSW = 0.0381
| Unknown | ADL6 (DYNAMIN-LIKE PROTEIN 6) GTPASE |
AT2G43160 | PredictedReconstituted Complextwo hybrid | FSW = 0.0952
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT3G08530 | Predictedsynthetic growth defectAffinity Capture-Western | FSW = 0.1665
| Unknown | CLATHRIN HEAVY CHAIN PUTATIVE |
AT5G42740 | PredictedAffinity Capture-MS | FSW = 0.0468
| Unknown | GLUCOSE-6-PHOSPHATE ISOMERASE CYTOSOLIC (PGIC) |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G23460 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.3665
| Unknown | BETA-ADAPTIN PUTATIVE |
AT4G11380 | Predictedinteraction predictionAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.2599
| Unknown | BETA-ADAPTIN PUTATIVE |
AT3G25980 | PredictedAffinity Capture-MS | FSW = 0.0206
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G60780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairGene neighbors method | FSW = 0.3023
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT2G17380 | Predictedinteraction predictiontwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSEnriched domain pair | FSW = 0.4154
| Unknown | AP19 PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G10730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSEnriched domain pairGene neighbors method | FSW = 0.2560
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT FAMILY PROTEIN |
AT4G35410 | Predictedtwo hybridEnriched domain pair | FSW = 0.2722
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT2G43650 | Predictedinteraction predictiontwo hybrid | FSW = 0.0272
| Unknown | EMB2777 (EMBRYO DEFECTIVE 2777) |
AT1G60070 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4096
| Unknown | BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT5G16750 | PredictedGene fusion method | FSW = 0.0099
| Unknown | TOZ (TORMOZEMBRYO DEFECTIVE) NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454