Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G24260 - ( SEP3 (SEPALLATA3) DNA binding / protein binding / transcription factor )
21 Proteins interacs with AT1G24260| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G24540
   | Experimentaltwo hybrid | FSW = 0.5134
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G69120
| Experimentaltwo hybridtwo hybridtwo hybridAffinity Capture-Westerninferred by author | FSW = 0.4859
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
| AT1G26310
| Experimentaltwo hybrid | FSW = 0.3218
| Class A:nucleusClass D:nucleus (p = 0.78)cytosol (p = 0.67) | CAL (CAULIFLOWER) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G57230
| Experimentaltwo hybrid | FSW = 0.4840
| Class A:nucleusClass D:nucleus (p = 0.78) | AGL16 (AGAMOUS-LIKE 16) TRANSCRIPTION FACTOR |
| AT5G23260
| Experimentaltwo hybridtwo hybrid3 hybrid method3 hybrid method | FSW = 0.3472
| Class A:nucleusClass D:nucleus (p = 0.78) | TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR |
| AT4G09960
| Experimentaltwo hybridtwo hybridtwo hybrid3 hybrid method | FSW = 0.3710
| Class A:nucleusClass D:nucleus (p = 0.78) | STK (SEEDSTICK) PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT5G14750
| Experimental | FSW = 0.0667
| Class A:nucleusClass D:nucleus (p = 0.78) | ATMYB66 (MYB DOMAIN PROTEIN 66) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
| AT4G18960
| Experimentaltwo hybridtwo hybridAffinity Capture-WesternReconstituted Complex | FSW = 0.4390
| Class A:nucleusClass D:nucleus (p = 0.78) | AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G44460
| Experimental | FSW = 0.0803
| Class A:nucleusClass D:nucleus (p = 0.78) | DPBF2 DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION ACTIVATOR BINDING / TRANSCRIPTION FACTOR |
| AT2G42830
| Experimentaltwo hybridtwo hybridtwo hybrid | FSW = 0.2571
| Class A:nucleusClass D:nucleus (p = 0.78) | SHP2 (SHATTERPROOF 2) PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT5G20240
| Experimentalreverse two hybrid | FSW = 0.2603
| Class A:nucleusClass D:nucleus (p = 0.78) | PI (PISTILLATA) DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G32551
| Experimentalpull down | FSW = 0.1177
| Class A:nucleusClass D:nucleus (p = 0.78) | LUG (LEUNIG) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION REPRESSOR |
| AT2G22540
| Experimentaltwo hybrid | FSW = 0.3125
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING |
| AT3G58780
| Experimentaltwo hybridtwo hybridtwo hybrid3 hybrid method3 hybrid method3 hybrid method | FSW = 0.5185
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT2G45650
| Experimentaltwo hybrid | FSW = 0.4678
| Class D:nucleus (p = 0.78)cytosol (p = 0.67) | AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR |
| AT3G54340
| Experimental | FSW = 0.2963
| Class D:nucleus (p = 0.78) | AP3 (APETALA 3) DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G43850
| Experimentalpull downtwo hybridpull down | FSW = 0.1634
| Class D:nucleus (p = 0.78) | SEU (SEUSS) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION COFACTOR |
| AT5G60910
| Experimentaltwo hybrid | FSW = 0.3218
| Class D:nucleus (p = 0.78) | AGL8 (AGAMOUS-LIKE 8) TRANSCRIPTION FACTOR |
| AT2G45660
| Experimentaltwo hybrid | FSW = 0.4132
| Class D:nucleus (p = 0.78) | AGL20 (AGAMOUS-LIKE 20) TRANSCRIPTION FACTOR |
| AT3G02310
| PredictedGene fusion methodCo-expression | FSW = 0.5501
| Class C:nucleus | SEP2 (SEPALLATA 2) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
| AT3G54610
| PredictedPhenotypic Enhancement | FSW = 0.0135
| Class C:nucleus | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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