Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G24320 - ( alpha-glucosidase putative )
23 Proteins interacs with AT1G24320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G60640 | Predictedinterologs mapping | FSW = 0.0342
| Unknown | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT5G66680 | Predictedinterologs mapping | FSW = 0.1280
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G30450 | PredictedSynthetic Lethality | FSW = 0.0726
| Unknown | CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1) CATIONCHLORIDE SYMPORTER/ SODIUMPOTASSIUMCHLORIDE SYMPORTER |
AT1G10630 | Predictedinterologs mapping | FSW = 0.0381
| Unknown | ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F) GTP BINDING / COPPER ION BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT1G09760 | PredictedSynthetic Lethality | FSW = 0.0202
| Unknown | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
AT1G79940 | Predictedinterologs mapping | FSW = 0.1232
| Unknown | ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G09210 | Predictedinterologs mapping | FSW = 0.3506
| Unknown | CALRETICULIN 2 (CRT2) |
AT5G23630 | Predictedinterologs mapping | FSW = 0.1631
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G20200 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT2G20510 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT1G10130 | Predictedinterologs mapping | FSW = 0.1176
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT1G67490 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4585
| Unknown | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
AT2G39630 | PredictedSynthetic Rescue | FSW = 0.2822
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT2G44660 | PredictedPhenotypic Suppression | FSW = 0.2455
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT1G57600 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.1634
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G16560 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.2514
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G09460 | PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.2319
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
AT1G08750 | Predictedinterologs mapping | FSW = 0.0750
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G01230 | Predictedinterologs mapping | FSW = 0.1111
| Unknown | ORMDL FAMILY PROTEIN |
AT1G09080 | PredictedPhenotypic Enhancement | FSW = 0.1664
| Unknown | BIP3 ATP BINDING |
AT1G43900 | PredictedSynthetic Lethality | FSW = 0.0556
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G09020 | PredictedSynthetic Lethality | FSW = 0.0202
| Unknown | SNF4 (HOMOLOG OF YEAST SUCROSE NONFERMENTING 4) PROTEIN KINASE ACTIVATOR |
AT1G09000 | PredictedSynthetic Lethality | FSW = 0.0816
| Unknown | ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454