Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G24470 - ( short-chain dehydrogenase/reductase (SDR) family protein )
49 Proteins interacs with AT1G24470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G66680 | Predictedtwo hybrid | FSW = 0.0623
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT1G14010 | Predictedtwo hybrid | FSW = 0.0194
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT5G47560 | Predictedtwo hybrid | FSW = 0.0634
| Unknown | TDT (TONOPLAST DICARBOXYLATE TRANSPORTER) MALATE TRANSMEMBRANE TRANSPORTER/ SODIUMDICARBOXYLATE SYMPORTER |
AT1G76490 | Predictedtwo hybrid | FSW = 0.0673
| Unknown | HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1) HYDROXYMETHYLGLUTARYL-COA REDUCTASE |
AT1G07420 | Predictedtwo hybrid | FSW = 0.1327
| Unknown | SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT2G01320 | Predictedtwo hybrid | FSW = 0.0090
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT1G29310 | Predictedtwo hybrid | FSW = 0.0295
| Unknown | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT1G08560 | Predictedinterologs mapping | FSW = 0.0439
| Unknown | SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR |
AT1G52600 | Predictedtwo hybrid | FSW = 0.0758
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT3G51460 | Predictedtwo hybrid | FSW = 0.0788
| Unknown | RHD4 (ROOT HAIR DEFECTIVE4) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE/ PHOSPHATIDYLINOSITOL-4-PHOSPHATE PHOSPHATASE |
AT3G55360 | Predictedtwo hybrid | FSW = 0.1322
| Unknown | CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH) |
AT1G22150 | Predictedtwo hybrid | FSW = 0.0342
| Unknown | SULTR13 SULFATE TRANSMEMBRANE TRANSPORTER |
AT1G13560 | Predictedtwo hybrid | FSW = 0.0494
| Unknown | AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT1G28490 | Predictedtwo hybrid | FSW = 0.0276
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT1G55130 | Predictedtwo hybrid | FSW = 0.0283
| Unknown | ENDOMEMBRANE PROTEIN 70 PUTATIVE |
AT1G67730 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4734
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT3G01380 | Predictedtwo hybrid | FSW = 0.0413
| Unknown | CATALYTIC/ TRANSFERASE |
AT3G02580 | Predictedtwo hybrid | FSW = 0.0423
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT5G02530 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT1G13180 | PredictedAffinity Capture-MS | FSW = 0.0269
| Unknown | DIS1 (DISTORTED TRICHOMES 1) ATP BINDING / ACTIN BINDING / PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G01750 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | ADF11 (ACTIN DEPOLYMERIZING FACTOR 11) ACTIN BINDING |
AT1G30825 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
AT3G48780 | Predictedinterologs mapping | FSW = 0.0079
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT2G33735 | Predictedinterologs mapping | FSW = 0.0180
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G20575 | Predictedinterologs mapping | FSW = 0.0320
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT3G06460 | PredictedSynthetic Lethality | FSW = 0.2332
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT4G39830 | Predictedtwo hybrid | FSW = 0.0839
| Unknown | L-ASCORBATE OXIDASE PUTATIVE |
AT2G42005 | Predictedtwo hybrid | FSW = 0.0340
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT2G40190 | Predictedtwo hybrid | FSW = 0.1286
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT2G36300 | Predictedtwo hybrid | FSW = 0.0219
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT2G34980 | Predictedtwo hybrid | FSW = 0.1219
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
AT2G25610 | Predictedtwo hybrid | FSW = 0.1029
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT2G22730 | Predictedtwo hybrid | FSW = 0.0623
| Unknown | TRANSPORTER-RELATED |
AT2G22425 | Predictedtwo hybrid | FSW = 0.1787
| Unknown | PEPTIDASE |
AT2G01170 | Predictedtwo hybrid | FSW = 0.0379
| Unknown | BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT1G54115 | Predictedtwo hybrid | FSW = 0.0613
| Unknown | CCX4 (CATION CALCIUM EXCHANGER 4) CATIONCATION ANTIPORTER |
AT1G31820 | Predictedtwo hybrid | FSW = 0.0678
| Unknown | AMINO ACID PERMEASE FAMILY PROTEIN |
AT1G31470 | Predictedtwo hybrid | FSW = 0.1010
| Unknown | NFD4 (NUCLEAR FUSION DEFECTIVE 4) |
AT1G20860 | Predictedtwo hybrid | FSW = 0.0515
| Unknown | PHOSPHATE TRANSPORTER FAMILY PROTEIN |
AT1G16570 | Predictedtwo hybrid | FSW = 0.3834
| Unknown | GLYCOSYL TRANSFERASE FAMILY 1 PROTEIN |
AT1G14290 | Predictedtwo hybrid | FSW = 0.1852
| Unknown | SBH2 (SPHINGOID BASE HYDROXYLASE 2) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G13580 | Predictedtwo hybrid | FSW = 0.0743
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G10090 | Predictedtwo hybrid | FSW = 0.0088
| Unknown | UNKNOWN PROTEIN |
AT1G08750 | Predictedtwo hybrid | FSW = 0.1327
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT1G06080 | Predictedtwo hybrid | FSW = 0.0735
| Unknown | ADS1 (DELTA 9 DESATURASE 1) OXIDOREDUCTASE |
AT1G02630 | Predictedtwo hybrid | FSW = 0.0154
| Unknown | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8) |
AT2G17845 | PredictedGene fusion methodCo-expression | FSW = 0.0312
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G05320 | PredictedGene fusion method | FSW = 0.0136
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT2G22040 | PredictedGene fusion method | FSW = 0.0204
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454