Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G25280 - ( AtTLP10 (TUBBY LIKE PROTEIN 10) phosphoric diester hydrolase/ transcription factor )

9 Proteins interacs with AT1G25280
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G75950

Experimental

two hybrid

FSW = 0.0378

Class A:

plasma membrane

Class B:

nucleus

cytosol

 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G24540

Experimental

FSW = 0.1977

Class B:

plasma membrane

nucleus

cytosol

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT5G23260

Experimental

FSW = 0.0726

Class B:

plasma membrane

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

 TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR
AT5G42190

Experimental

FSW = 0.0205

Unknown

 ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G16760

Predicted

in vitro

FSW = 0.0529

Class C:

plasma membrane

 TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT1G28060

Predicted

two hybrid

FSW = 0.0222

Unknown

 SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT4G36020

Predicted

two hybrid

FSW = 0.0278

Unknown

 CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT1G43640

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2657

Unknown

 ATTLP5 (TUBBY LIKE PROTEIN 5) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR
AT1G76900

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2382

Unknown

 ATTLP1 (TUBBY LIKE PROTEIN 1) PHOSPHORIC DIESTER HYDROLASE/ TRANSCRIPTION FACTOR

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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