Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G25420 - ( unknown protein )

26 Proteins interacs with AT1G25420
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G04270

Predicted

two hybrid

two hybrid

FSW = 0.0368

Unknown

RPS15 (CYTOSOLIC RIBOSOMAL PROTEIN S15) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G06530

Predicted

Phenotypic Enhancement

FSW = 0.1116

Unknown

VPS21
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0176

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G19830

Predicted

Colocalization

FSW = 0.1250

Unknown

SNF72
AT5G22770

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

ALPHA-ADR (ALPHA-ADAPTIN) BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT3G43810

Predicted

two hybrid

FSW = 0.0093

Unknown

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT5G20920

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1977

Unknown

EIF2 BETA TRANSLATION INITIATION FACTOR
AT5G14170

Predicted

two hybrid

two hybrid

FSW = 0.0086

Unknown

CHC1
AT5G37510

Predicted

two hybrid

two hybrid

FSW = 0.0325

Unknown

EMB1467 (EMBRYO DEFECTIVE 1467) NADH DEHYDROGENASE (UBIQUINONE)/ NADH DEHYDROGENASE/ ELECTRON CARRIER/ IRON-SULFUR CLUSTER BINDING / OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON NADH OR NADPH
AT5G49650

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0282

Unknown

XYLULOSE KINASE PUTATIVE
AT2G27600

Predicted

two hybrid

two hybrid

Affinity Capture-MS

Reconstituted Complex

Colocalization

FSW = 0.1153

Unknown

SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G45500

Predicted

two hybrid

two hybrid

FSW = 0.1087

Unknown

ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G20630

Predicted

two hybrid

two hybrid

FSW = 0.0212

Unknown

UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE
AT5G21274

Predicted

two hybrid

FSW = 0.0077

Unknown

CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT1G48970

Predicted

Affinity Capture-MS

FSW = 0.2297

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G53880Predicted

Affinity Capture-MS

FSW = 0.1434

Unknown

GTP BINDING / TRANSLATION INITIATION FACTOR
AT1G73030

Predicted

Colocalization

Reconstituted Complex

FSW = 0.1504

Unknown

VPS462
AT2G34970

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.2612

Unknown

EIF4-GAMMA/EIF5/EIF2-EPSILON DOMAIN-CONTAINING PROTEIN
AT3G07300

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1463

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT3G23270

Predicted

Colocalization

FSW = 0.0522

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT4G32175

Predicted

Affinity Capture-MS

FSW = 0.0750

Unknown

RNA BINDING
AT5G04850

Predicted

Phenotypic Enhancement

FSW = 0.1078

Unknown

VPS602
AT4G29020

Predicted

two hybrid

FSW = 0.0263

Unknown

GLYCINE-RICH PROTEIN
AT5G38640

Predicted

interaction prediction

FSW = 0.2227

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT1G72340

Predicted

interaction prediction

FSW = 0.0693

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT2G25355

Predicted

interaction prediction

FSW = 0.0706

Unknown

EXONUCLEASE-RELATED

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454