Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G25490 - ( RCN1 (ROOTS CURL IN NPA) protein phosphatase type 2A regulator )
9 Proteins interacs with AT1G25490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G58140 | Experimentaltwo hybridReconstituted Complex | FSW = 0.0889
| Class A:plasma membraneClass B:vacuolegolgicytosolClass D:plastid (p = 0.78) | PHOT2 (PHOTOTROPIN 2) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G73590 | Experimental | FSW = 0.0656
| Class A:plasma membraneClass B:endoplasmic reticulumcytosol | PIN1 (PIN-FORMED 1) TRANSPORTER |
AT5G57090 | Experimental | FSW = 0.0800
| Class A:plasma membraneClass B:endoplasmic reticulum | EIR1 (ETHYLENE INSENSITIVE ROOT 1) AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER/ AUXINHYDROGEN SYMPORTER/ TRANSPORTER |
AT4G15415 | Experimentaltwo hybrid | FSW = 0.1569
| Unknown | ATB GAMMA POLY(U) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G09880 | Experimentaltwo hybridReconstituted Complex | FSW = 0.1381
| Unknown | ATB BETA PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT3G07370 | Experimentalbiochemical | FSW = 0.1026
| Unknown | CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE |
AT3G25800 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0373
| Class C:plasma membrane | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G13320 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0538
| Class C:plasma membrane | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G60210 | PredictedGene fusion method | FSW = 0.0745
| Class C:plasma membrane | LOCATED IN PLASMA MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT2G370801) HAS 77946 BLAST HITS TO 39215 PROTEINS IN 1793 SPECIES ARCHAE - 845 BACTERIA - 8877 METAZOA - 39997 FUNGI - 6049 PLANTS - 2988 VIRUSES - 248 OTHER EUKARYOTES - 18942 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454