Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G25510 - ( aspartyl protease family protein )

39 Proteins interacs with AT1G25510
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Affinity Capture-MS

FSW = 0.0401

Unknown

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT2G33120

Predicted

Affinity Capture-MS

FSW = 0.0952

Unknown

SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)
AT3G09630

Predicted

Affinity Capture-MS

FSW = 0.0072

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT1G76040

Predicted

Affinity Capture-MS

FSW = 0.1702

Unknown

CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G62870

Predicted

Synthetic Lethality

FSW = 0.0381

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G44350

Predicted

Affinity Capture-MS

FSW = 0.1678

Unknown

ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE
AT3G55400

Predicted

Affinity Capture-MS

FSW = 0.0296

Unknown

OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G61820

Predicted

Gene fusion method

Co-expression

FSW = 0.0952

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT3G23940

Predicted

Affinity Capture-MS

FSW = 0.1704

Unknown

DEHYDRATASE FAMILY
AT1G75370

Predicted

Affinity Capture-MS

FSW = 0.0504

Unknown

SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHATIDYLINOSITOL TRANSFER-LIKE PROTEIN PUTATIVE
AT1G61290

Predicted

two hybrid

FSW = 0.0861

Unknown

SYP124 (SYNTAXIN OF PLANTS 124) SNAP RECEPTOR
AT4G21680

Predicted

Affinity Capture-MS

FSW = 0.0326

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G19760

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

PRF1 (PROFILIN 1) ACTIN BINDING
AT4G00520

Predicted

Affinity Capture-MS

FSW = 0.0093

Unknown

ACYL-COA THIOESTERASE FAMILY PROTEIN
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.1354

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G38880

Predicted

Affinity Capture-MS

FSW = 0.0199

Unknown

NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR
AT5G02730

Predicted

Affinity Capture-MS

FSW = 0.1119

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G66590

Predicted

Affinity Capture-MS

FSW = 0.0696

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT2G03120

Predicted

Affinity Capture-MS

FSW = 0.0182

Unknown

ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT5G44100

Predicted

Reconstituted Complex

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0216

Unknown

CKL7 (CASEIN KINASE I-LIKE 7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G15960

Predicted

Affinity Capture-MS

FSW = 0.0673

Unknown

NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT1G02100

Predicted

Affinity Capture-MS

FSW = 0.0430

Unknown

LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G12130

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G12730

Predicted

Affinity Capture-MS

FSW = 0.0322

Unknown

CELL DIVISION CYCLE PROTEIN-RELATED
AT2G28360

Predicted

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

FSW = 0.0338

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT1G27320

Predicted

Affinity Capture-MS

FSW = 0.1075

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT2G03690

Predicted

Affinity Capture-MS

FSW = 0.0441

Unknown

COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN
AT2G23820

Predicted

Affinity Capture-MS

FSW = 0.0529

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT2G34980

Predicted

Affinity Capture-MS

FSW = 0.1104

Unknown

SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT2G35390

Predicted

Affinity Capture-MS

FSW = 0.0185

Unknown

RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI)
AT2G40010

Predicted

Affinity Capture-MS

FSW = 0.0238

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A)
AT2G46070

Predicted

Affinity Capture-MS

FSW = 0.1245

Unknown

MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE
AT3G18660

Predicted

Affinity Capture-MS

FSW = 0.0894

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G27580

Predicted

Affinity Capture-MS

FSW = 0.1301

Unknown

ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G55020

Predicted

Affinity Capture-MS

FSW = 0.0766

Unknown

RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT3G63280

Predicted

Affinity Capture-MS

FSW = 0.0166

Unknown

ATNEK4 (NIMA-RELATED KINASE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G28470

Predicted

Affinity Capture-MS

FSW = 0.0519

Unknown

TRANSPORTER
AT5G37830

Predicted

Affinity Capture-MS

FSW = 0.1517

Unknown

OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT3G20015

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0952

Unknown

ASPARTIC-TYPE ENDOPEPTIDASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454