Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G26140 - ( unknown protein )
65 Proteins interacs with AT1G26140Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G33120 | PredictedAffinity Capture-MS | FSW = 0.1677
| Unknown | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
AT3G08950 | PredictedAffinity Capture-MS | FSW = 0.0746
| Unknown | ELECTRON TRANSPORT SCO1/SENC FAMILY PROTEIN |
AT1G15210 | PredictedAffinity Capture-MS | FSW = 0.0703
| Unknown | PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G26080 | PredictedAffinity Capture-MS | FSW = 0.0248
| Unknown | ATGLDP2 (ARABIDOPSIS THALIANA GLYCINE DECARBOXYLASE P-PROTEIN 2) ATP BINDING / GLYCINE DEHYDROGENASE (DECARBOXYLATING) |
AT5G25400 | PredictedAffinity Capture-MS | FSW = 0.1523
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT1G10070 | PredictedAffinity Capture-MS | FSW = 0.0929
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G18790 | PredictedAffinity Capture-MS | FSW = 0.1782
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.0616
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT4G28950 | PredictedAffinity Capture-MS | FSW = 0.0196
| Unknown | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
AT3G55810 | PredictedAffinity Capture-MS | FSW = 0.1531
| Unknown | PYRUVATE KINASE PUTATIVE |
AT4G36640 | Predictedinterologs mapping | FSW = 0.0201
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G40370 | PredictedAffinity Capture-MS | FSW = 0.0665
| Unknown | GLUTAREDOXIN PUTATIVE |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.1558
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT4G36860 | PredictedAffinity Capture-MS | FSW = 0.0918
| Unknown | ZINC ION BINDING |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0402
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.0435
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.1399
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.0244
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.1741
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0590
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT2G37470 | PredictedAffinity Capture-MS | FSW = 0.0752
| Unknown | HISTONE H2B PUTATIVE |
AT5G20080 | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | NADH-CYTOCHROME B5 REDUCTASE PUTATIVE |
AT2G47510 | PredictedAffinity Capture-MS | FSW = 0.0516
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G13650 | PredictedAffinity Capture-MS | FSW = 0.0797
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
AT2G14580 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | ATPRB1 |
AT5G02730 | PredictedAffinity Capture-MS | FSW = 0.1212
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G03120 | PredictedAffinity Capture-MS | FSW = 0.0678
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT1G15960 | PredictedAffinity Capture-MS | FSW = 0.1168
| Unknown | NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0980
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G22550 | PredictedAffinity Capture-MS | FSW = 0.0833
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G10210 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.0587
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G47830 | PredictedAffinity Capture-MS | FSW = 0.0961
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G60680 | PredictedAffinity Capture-MS | FSW = 0.0610
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G14560 | PredictedAffinity Capture-MS | FSW = 0.1354
| Unknown | LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) |
AT2G17500 | Predictedtwo hybrid | FSW = 0.0146
| Unknown | AUXIN EFFLUX CARRIER FAMILY PROTEIN |
AT2G17620 | PredictedAffinity Capture-MS | FSW = 0.1601
| Unknown | CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G31020 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.1056
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0624
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G38490 | PredictedAffinity Capture-MS | FSW = 0.0665
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0990
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G27110 | PredictedAffinity Capture-MS | FSW = 0.0065
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT3G44590 | PredictedAffinity Capture-MS | FSW = 0.1168
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2D) |
AT4G04885 | PredictedAffinity Capture-MS | FSW = 0.0526
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT4G22790 | PredictedAffinity Capture-MS | FSW = 0.0544
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.0129
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G26667 | Predictedinterologs mapping | FSW = 0.0321
| Unknown | PYR6 CYTIDYLATE KINASE/ URIDYLATE KINASE |
AT5G38290 | Predictedinterologs mappinginterologs mapping | FSW = 0.0201
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT5G39400 | PredictedAffinity Capture-MS | FSW = 0.0556
| Unknown | PTEN1 PHOSPHATASE |
AT5G48710 | PredictedAffinity Capture-MS | FSW = 0.0305
| Unknown | UBIQUITIN-RELATED |
AT2G03667 | PredictedAffinity Capture-MS | FSW = 0.0935
| Unknown | ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT2G21250 | PredictedAffinity Capture-MS | FSW = 0.0376
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G22040 | PredictedAffinity Capture-MS | FSW = 0.1610
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G39590 | PredictedAffinity Capture-MS | FSW = 0.1096
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT2G46070 | PredictedAffinity Capture-MS | FSW = 0.1077
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G16565 | PredictedAffinity Capture-MS | FSW = 0.0612
| Unknown | ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G30842 | PredictedAffinity Capture-MS | FSW = 0.1071
| Unknown | PDR10 (PLEIOTROPIC DRUG RESISTANCE 10) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G25860 | PredictedAffinity Capture-MS | FSW = 0.0859
| Unknown | ORP4A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4A) OXYSTEROL BINDING |
AT4G29640 | PredictedAffinity Capture-MS | FSW = 0.1153
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT5G13010 | PredictedAffinity Capture-MS | FSW = 0.1141
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G16170 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | UNKNOWN PROTEIN |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.1319
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT5G37830 | PredictedAffinity Capture-MS | FSW = 0.1156
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454