Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G26160 - ( metal-dependent phosphohydrolase HD domain-containing protein )
33 Proteins interacs with AT1G26160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02090 | PredictedAffinity Capture-MS | FSW = 0.0117
| Class C:plastid | MITOCHONDRIAL PROCESSING PEPTIDASE BETA SUBUNIT PUTATIVE |
AT1G23190 | PredictedSynthetic Lethality | FSW = 0.0401
| Class C:plastid | PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE |
AT1G16030 | PredictedAffinity Capture-MS | FSW = 0.0088
| Class C:plastid | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G06290 | Predictedbiochemicalbiochemical | FSW = 0.0483
| Class C:plastid | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT5G63400 | PredictedSynthetic Rescue | FSW = 0.0288
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G44300 | PredictedAffinity Capture-MSinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSinterologs mappingSynthetic LethalityReconstituted Complexco-fractionationCo-fractionation | FSW = 0.3295
| Unknown | NIT2 (NITRILASE 2) INDOLE-3-ACETONITRILE NITRILASE/ INDOLE-3-ACETONITRILE NITRILE HYDRATASE/ NITRILASE |
AT2G06530 | Predictedtwo hybrid | FSW = 0.0178
| Unknown | VPS21 |
AT1G74560 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT1G02500 | Predictedinterologs mappingSynthetic RescueAffinity Capture-MS | FSW = 0.0766
| Unknown | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT5G56350 | PredictedAffinity Capture-MS | FSW = 0.0101
| Unknown | PYRUVATE KINASE PUTATIVE |
AT3G13445 | PredictedSynthetic Lethality | FSW = 0.0091
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G44510 | PredictedAffinity Capture-Westerninterologs mappinginterologs mappingSynthetic LethalityAffinity Capture-MS | FSW = 0.1741
| Unknown | P21CIP1-BINDING PROTEIN-RELATED |
AT1G06960 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT5G15550 | PredictedAffinity Capture-MS | FSW = 0.0126
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G10330 | PredictedSynthetic Lethality | FSW = 0.0281
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT2G18230 | PredictedAffinity Capture-Westerninterologs mappingSynthetic Lethality | FSW = 0.1076
| Unknown | ATPPA2 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 2) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT1G23480 | PredictedAffinity Capture-MS | FSW = 0.1123
| Unknown | ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G23460 | PredictedSynthetic Lethality | FSW = 0.0285
| Unknown | POLYGALACTURONASE |
AT2G26695 | PredictedAffinity Capture-WesternReconstituted ComplexSynthetic LethalityAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.2355
| Unknown | BINDING / ZINC ION BINDING |
AT2G47090 | PredictedSynthetic Lethality | FSW = 0.0181
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G16840 | Predictedsynthetic growth defect | FSW = 0.0340
| Unknown | ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT3G17720 | Predictedinterologs mapping | FSW = 0.0239
| Unknown | PYRIDOXAL-DEPENDENT DECARBOXYLASE FAMILY PROTEIN |
AT4G14320 | PredictedSynthetic Rescue | FSW = 0.0256
| Unknown | 60S RIBOSOMAL PROTEIN L36A/L44 (RPL36AB) |
AT5G27970 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.0040
| Unknown | BINDING |
AT5G56740 | PredictedSynthetic Lethality | FSW = 0.0523
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G57480 | PredictedSynthetic Lethality | FSW = 0.0486
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G34580 | Predictedinterologs mapping | FSW = 0.0299
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G55060 | Predictedbiochemical | FSW = 0.0301
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G57660 | Predictedinterologs mappingSynthetic Rescue | FSW = 0.0195
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21E) |
AT2G34180 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1546
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G13060 | PredictedAffinity Capture-MS | FSW = 0.1091
| Unknown | ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK) |
AT3G54085 | Predictedinterologs mapping | FSW = 0.2338
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM CONTAINS INTERPRO DOMAIN/S YOS1-LIKE (INTERPROIPR013880) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G379751) HAS 139 BLAST HITS TO 139 PROTEINS IN 61 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 86 FUNGI - 16 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 11 (SOURCE NCBI BLINK) |
AT2G23820 | PredictedPhylogenetic profile method | FSW = 0.0114
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454