Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G26310 - ( CAL (CAULIFLOWER) DNA binding / transcription factor )

13 Proteins interacs with AT1G26310
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G24540

Experimental

two hybrid

FSW = 0.3333

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

AGL24 (AGAMOUS-LIKE 24) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT1G69120

Experimental

FSW = 0.3086

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G24260

Experimental

two hybrid

FSW = 0.3218

Class A:

nucleus

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

SEP3 (SEPALLATA3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G38620

Experimental

FSW = 0.0936

Class A:

nucleus

Class D:

nucleus (p = 0.78)

MADS-BOX PROTEIN (AGL73)
AT1G48150

Experimental

two hybrid

FSW = 0.0936

Class A:

nucleus

Class D:

nucleus (p = 0.78)

MADS-BOX PROTEIN (AGL74 )
AT2G22540

Experimental

two hybrid

FSW = 0.2523

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING
AT2G45650

Experimental

FSW = 0.3062

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR
AT2G45660

Experimental

two hybrid

two hybrid

FSW = 0.2593

Class D:

nucleus (p = 0.78)

AGL20 (AGAMOUS-LIKE 20) TRANSCRIPTION FACTOR
AT4G02060

Predicted

interologs mapping

Reconstituted Complex

Synthetic Rescue

FSW = 0.0543

Class C:

nucleus

PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT1G07660Predicted

Affinity Capture-MS

FSW = 0.0083

Unknown

HISTONE H4
AT1G04950

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT3G25100

Predicted

Affinity Capture-Western

FSW = 0.0258

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT1G09460

Predicted

interologs mapping

FSW = 0.0353

Unknown

GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454