Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G26450 - ( beta-13-glucanase-related )
67 Proteins interacs with AT1G26450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G61790 | PredictedPhenotypic Enhancement | FSW = 0.1739
| Unknown | CALNEXIN 1 (CNX1) |
AT5G66680 | PredictedPhenotypic Enhancement | FSW = 0.2070
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT2G44610 | Predictedinteraction prediction | FSW = 0.1277
| Unknown | RAB6A GTP BINDING / PROTEIN BINDING |
AT1G31780 | PredictedPhenotypic Enhancement | FSW = 0.2131
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | PredictedPhenotypic Enhancement | FSW = 0.2766
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.1172
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT2G30710 | PredictedPhenotypic Enhancement | FSW = 0.3060
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT5G27380 | Predictedinterologs mapping | FSW = 0.0296
| Unknown | GSH2 (GLUTATHIONE SYNTHETASE 2) GLUTATHIONE SYNTHASE |
AT5G63840 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1902
| Unknown | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G49340 | PredictedSynthetic Lethality | FSW = 0.0220
| Unknown | ATPI4K ALPHA 1-PHOSPHATIDYLINOSITOL 4-KINASE/ INOSITOL OR PHOSPHATIDYLINOSITOL KINASE |
AT5G17770 | PredictedPhenotypic Suppression | FSW = 0.0234
| Unknown | ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.2168
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G07670 | PredictedPhenotypic Enhancement | FSW = 0.2634
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT4G34580 | PredictedSynthetic Lethality | FSW = 0.0915
| Unknown | COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT5G52640 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0521
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G19830 | Predictedinterologs mapping | FSW = 0.0370
| Unknown | SNF72 |
AT4G17270 | Predictedsynthetic growth defect | FSW = 0.0444
| Unknown | MO25 FAMILY PROTEIN |
AT4G35020 | Predictedinterologs mapping | FSW = 0.0171
| Unknown | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
AT4G33090 | Predictedinteraction prediction | FSW = 0.0075
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0024
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G56170 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0109
| Unknown | NF-YC2 (NUCLEAR FACTOR Y SUBUNIT C2) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G37940 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0137
| Unknown | AGL21 TRANSCRIPTION FACTOR |
AT2G03710 | Predictedinterologs mapping | FSW = 0.0095
| Unknown | SEP4 (SEPALLATA 4) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G18280 | PredictedPhenotypic Enhancement | FSW = 0.3497
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT1G71270 | PredictedPhenotypic Enhancement | FSW = 0.1766
| Unknown | POK (POKY POLLEN TUBE) |
AT1G67490 | Predictedinteraction predictionPhenotypic EnhancementSynthetic LethalitySynthetic Lethality | FSW = 0.3075
| Unknown | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
AT2G39630 | PredictedPhenotypic Enhancement | FSW = 0.1636
| Unknown | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
AT3G05710 | PredictedPhenotypic Enhancement | FSW = 0.2455
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT1G01020 | PredictedPhenotypic Enhancement | FSW = 0.0959
| Unknown | ARV1 |
AT5G38460 | PredictedPhenotypic Enhancement | FSW = 0.2582
| Unknown | ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN |
AT2G44660 | PredictedPhenotypic Enhancement | FSW = 0.2125
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT4G39220 | PredictedPhenotypic Enhancement | FSW = 0.2835
| Unknown | ATRER1A |
AT5G63960 | PredictedSynthetic Lethality | FSW = 0.0110
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G37560 | PredictedSynthetic Lethality | FSW = 0.0033
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT1G07430 | PredictedSynthetic Lethality | FSW = 0.0706
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G16560 | PredictedPhenotypic Enhancement | FSW = 0.3049
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G02145 | PredictedPhenotypic Enhancement | FSW = 0.2230
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G16900 | PredictedPhenotypic Enhancement | FSW = 0.0973
| Unknown | SUGAR BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G20575 | PredictedPhenotypic Enhancement | FSW = 0.1600
| Unknown | DOLICHYL-PHOSPHATE BETA-D-MANNOSYLTRANSFERASE PUTATIVE / DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE PUTATIVE / MANNOSE-P-DOLICHOL SYNTHASE PUTATIVE |
AT1G48760 | PredictedPhenotypic Enhancement | FSW = 0.2267
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G50030 | PredictedSynthetic Rescueco-fractionationCo-fractionation | FSW = 0.0254
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT1G73570 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0512
| Unknown | SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED |
AT2G34500 | PredictedPhenotypic Enhancement | FSW = 0.1895
| Unknown | CYP710A1 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 1) C-22 STEROL DESATURASE/ OXYGEN BINDING |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.2213
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G18430 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0612
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G50860 | PredictedPhenotypic Enhancement | FSW = 0.1636
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G25750 | PredictedPhenotypic Suppression | FSW = 0.0146
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT4G33080 | Predictedsynthetic growth defect | FSW = 0.0247
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G09740 | Predictedsynthetic growth defect | FSW = 0.0199
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10260 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1089
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G26680 | PredictedSynthetic Lethality | FSW = 0.0152
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.1399
| Unknown | BINDING |
AT5G52210 | PredictedPhenotypic Enhancement | FSW = 0.1204
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT1G57600 | PredictedPhenotypic Enhancement | FSW = 0.3993
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
AT1G57620 | PredictedAffinity Capture-Western | FSW = 0.0561
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G60680 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0093
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G22530 | PredictedPhenotypic Enhancement | FSW = 0.3431
| Unknown | CATALYTIC/ TRANSFERASE |
AT2G27600 | Predictedinterologs mapping | FSW = 0.0523
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G34770 | PredictedPhenotypic Suppression | FSW = 0.1449
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G05000 | PredictedPhenotypic Enhancement | FSW = 0.0822
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT3G55380 | PredictedPhenotypic Suppression | FSW = 0.0443
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT4G08500 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0935
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
AT4G32530 | Predictedinterologs mapping | FSW = 0.0269
| Unknown | VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE |
AT4G37990 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.0152
| Unknown | ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) ARYL-ALCOHOL DEHYDROGENASE/ MANNITOL DEHYDROGENASE |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.1152
| Unknown | ORMDL FAMILY PROTEIN |
AT5G24940 | Predictedinteraction prediction | FSW = 0.0523
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G54960 | Predictedinteraction prediction | FSW = 0.0761
| Unknown | ANP2 MAP KINASE KINASE KINASE/ KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454